LOC103043774


Basic Information

Item Value
gene id LOC103043774
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4103372 ~ 4105753 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669408.1
taattgaataattttaaGATAAGTTTCAGTGTGGTTTGTTATATTTGTTACTAAGTAGCATACTTGTCACATTCTAAGCTAATATCTGTCCGTTTTGTAAACTTgaacaacatttaaattactaaaatatatgtttgtcaCCCTTTATAactcttgtcagtgtttatatatgtaaactatatattagaaatgtatgtatgttacaATTTATATGTTTGTCTGTCGTTTATGGATGTGGCTCACAGTAAAGGACACCTCCTTATCTGTAGATGCCCTCTTGATGTGACCTTCCTCCTGTCCTTGGTCCCCTTTTCCCTGGTCCCTGATGCCCCCTACCCAAAAGCTCAAGCTCAGGATGGAACATCCCAGGCCAGTAAGATTGCAGGCAGGAGAAAGAGAACCAGCTTCACCAAAGAACACTTGGAACTCCTCAGAATGGCTTTTAGTGTGGACCCCTACCCTGGCATCAGTGTCAGAGAGAGCCTTTCTCAAGCCACCGGCCTTCCAGAGTCACGCATTCAGGTTTGGTTCCAGAACAAGAGAGCAAGAACCTTGAAGAACAGGGCCACCCGGACCTCTCCTCAACCAGAAGCGGTAGTGTCTCCTCTGTCAAGCCCCTTCCTGCCACCTCACATGGTTGGAATATTGGAGAATGGTCAACCAAGGTCCATGACAGAAGCACCAGTTAACTTTAGCTTCACCCAGCCTCAGATGAAAGAAGATGGCGATCAGGAGGGATTCTTCTCTGACATGTCTTCACAGATCTTCAGCTTTCCACTGAGTGGCACCTACTGCAGCACTCCAGTCACCAGGCCACGCCAGGACAGGCTGATGGGCACCAGCTTGAGTCCTTCTCCTCTTACTTCTGATCTGGAGGTCACGCCAGTCAGCTGGTCCTCAGTAAGAGGAGGAAGATCACAGTCTACTTCAGATTCTCTGTGGAGCCCAGCACCAGCACTTCAGGCCATTGGAAACAATGGCACAGATGAGTCAAGTCAGGTCTTCCTCTACCCACCACCTCCATATCCTCATGGCAGTGTCTGCAGTGGATATGCTGGAGGTTTGAAGTCCAACTCCACCTCCCCTGGATCTCCTGATTCTGCTTTTTGGGATATGGGGCTGGACAGCGCCTCTCCATCCGTGCCGTACCCTCAGGGTGGCAGCCTCTGGGAGGAGCCCACTCGGATGCAGTCTCTGGCCCCACTGCCCAACCTCTCCTCTCAGTGTGTGGAGGAAGTTCTTGGAGAGATGCAGCCAGGTTGGTGGAAGATCAACGGGCAGATGGAGCTTCAGTAGTTTTAATACTGGATggaatcacatttttatttattatttttttagtcataaGATTTGACTGATTTTTAATACAAGGACTCTAAGCTGCTTTGTTTGCCTACTTAATGACGACTCAAATCAAATGACTTGAAATGATTGAAATGATCATATGTTCAGAATCTTTTATTTATGATATTGTGGTAATGCAGGTCACACAACAATATCAAACCTCAGACAGAGGAAACTATTTgctctttatatttaatgtggATCTCTTTCAAATAGCAGGTCTCCAAATGACCTAATGCTGCAAGAATCCATCAGTATTTATGACCATTGGTCCTTgttgcatatttattttataatttatttcaccACATTGTTGGGATGCAGGatggtaaaatgtaa
>XM_022669409.1
TAAGTGTTAGGACATCCAGTTGTCATAACATGATGTCATACCTTACTATGAAAAGTAGTTTTGTTAATTATCTAAACATGCTGAGTTCTTAGATGATATCCTGAgaattgagtgtgtgtttgtggtaaaTAACAAAAGAGTTTGTTGAGGTTGTGTATGAGCATAAAGGTGTGAAGTGGTGTGTGAACTGGGGTGTGGCGGGTGAAAATGGTTACTGATGGGCATTAGTTCAGATCAGTGAGATCTACCTTTTAGAACTTCACAGCTCCTCCCACCTGTGCCAGAAGAAATTCTGGGATAAATACTGCTTGCTCTCAGTCCTGAGGCAGAATCTGAAGAAGCAACAAGTACTGAGTACATCTTCCCTCTCAGCTGGAGCTTACCTGTTTAGAAAACTTCCTCAAGTCAGCTCAAGAACAGCTTAAAGATATGTGGACTGATAGCAGCATTGCTCAAGCTCAGGATGGAACATCCCAGGCCAGTAAGATTGCAGGCAGGAGAAAGAGAACCAGCTTCACCAAAGAACACTTGGAACTCCTCAGAATGGCTTTTAGTGTGGACCCCTACCCTGGCATCAGTGTCAGAGAGAGCCTTTCTCAAGCCACCGGCCTTCCAGAGTCACGCATTCAGGTTTGGTTCCAGAACAAGAGAGCAAGAACCTTGAAGAACAGGGCCACCCGGACCTCTCCTCAACCAGAAGCGGTAGTGTCTCCTCTGTCAAGCCCCTTCCTGCCACCTCACATGGTTGGAATATTGGAGAATGGTCAACCAAGGTCCATGACAGAAGCACCAGTTAACTTTAGCTTCACCCAGCCTCAGATGAAAGAAGATGGCGATCAGGAGGGATTCTTCTCTGACATGTCTTCACAGATCTTCAGCTTTCCACTGAGTGGCACCTACTGCAGCACTCCAGTCACCAGGCCACGCCAGGACAGGCTGATGGGCACCAGCTTGAGTCCTTCTCCTCTTACTTCTGATCTGGAGGTCACGCCAGTCAGCTGGTCCTCAGTAAGAGGAGGAAGATCACAGTCTACTTCAGATTCTCTGTGGAGCCCAGCACCAGCACTTCAGGCCATTGGAAACAATGGCACAGATGAGTCAAGTCAGGTCTTCCTCTACCCACCACCTCCATATCCTCATGGCAGTGTCTGCAGTGGATATGCTGGAGGTTTGAAGTCCAACTCCACCTCCCCTGGATCTCCTGATTCTGCTTTTTGGGATATGGGGCTGGACAGCGCCTCTCCATCCGTGCCGTACCCTCAGGGTGGCAGCCTCTGGGAGGAGCCCACTCGGATGCAGTCTCTGGCCCCACTGCCCAACCTCTCCTCTCAGTGTGTGGAGGAAGTTCTTGGAGAGATGCAGCCAGGTTGGTGGAAGATCAACGGGCAGATGGAGCTTCAGTAGTTTTAATACTGGATggaatcacatttttatttattatttttttagtcataaGATTTGACTGATTTTTAATACAAGGACTCTAAGCTGCTTTGTTTGCCTACTTAATGACGACTCAAATCAAATGACTTGAAATGATTGAAATGATCATATGTTCAGAATCTTTTATTTATGATATTGTGGTAATGCAGGTCACACAACAATATCAAACCTCAGACAGAGGAAACTATTTgctctttatatttaatgtggATCTCTTTCAAATAGCAGGTCTCCAAATGACCTAATGCTGCAAGAATCCATCAGTATTTATGACCATTGGTCCTTgttgcatatttattttataatttatttcaccACATTGTTGGGATGCAGGatggtaaaatgtaa
>XM_022669410.1
TAAGTGTTAGGACATCCAGTTGTCATAACATGATGTCATACCTTACTATGAAAAGTAGTTTTGTTAATTATCTAAACATGCTGAGTTCTTAGATGATATCCTGAgaattgagtgtgtgtttgtggtaaaTAACAAAAGAGTTTGTTGAGGTTGTGTATGAGCATAAAGGTGTGAAGTGGTGTGTGAACTGGGGTGTGGCGGGTGAAAATGGTTACTGATGGGCATTAGTTCAGATCAGTGAGATCTACCTTTTAGAACTTCACAGCTCCTCCCACCTGTGCCAGAAGAAATTCTGGGATAAATACTGCTTGCTCTCAGTCCTGAGGCAGAATCTGAAGAAGCAACAAGTACTGAGTACATCTTCCCTCTCAGCTGGAGCTTACCTGTTTAGAAAACTTCCTCAAGTCAGCTCAAGAACAGCTTAAAGATATGTGGACTGATAGCAGCATTGATGCCCTCTTGATGTGACCTTCCTCCTGTCCTTGGTCCCCTTTTCCCTGGTCCCTGATGCCCCCTACCCAAAAGGTCTGAAGCTCAAGCTCAGGATGGAACATCCCAGGCCAGTAAGATTGCAGGCAGGAGAAAGAGAACCAGCTTCACCAAAGAACACTTGGAACTCCTCAGAATGGCTTTTAGTGTGGACCCCTACCCTGGCATCAGTGTCAGAGAGAGCCTTTCTCAAGCCACCGGCCTTCCAGAGTCACGCATTCAGGTTTGGTTCCAGAACAAGAGAGCAAGAACCTTGAAGAACAGGGCCACCCGGACCTCTCCTCAACCAGAAGCGGTAGTGTCTCCTCTGTCAAGCCCCTTCCTGCCACCTCACATGGTTGGAATATTGGAGAATGGTCAACCAAGGTCCATGACAGAAGCACCAGTTAACTTTAGCTTCACCCAGCCTCAGATGAAAGAAGATGGCGATCAGGAGGGATTCTTCTCTGACATGTCTTCACAGATCTTCAGCTTTCCACTGAGTGGCACCTACTGCAGCACTCCAGTCACCAGGCCACGCCAGGACAGGCTGATGGGCACCAGCTTGAGTCCTTCTCCTCTTACTTCTGATCTGGAGGTCACGCCAGTCAGCTGGTCCTCAGTAAGAGGAGGAAGATCACAGTCTACTTCAGATTCTCTGTGGAGCCCAGCACCAGCACTTCAGGCCATTGGAAACAATGGCACAGATGAGTCAAGTCAGGTCTTCCTCTACCCACCACCTCCATATCCTCATGGCAGTGTCTGCAGTGGATATGCTGGAGGTTTGAAGTCCAACTCCACCTCCCCTGGATCTCCTGATTCTGCTTTTTGGGATATGGGGCTGGACAGCGCCTCTCCATCCGTGCCGTACCCTCAGGGTGGCAGCCTCTGGGAGGAGCCCACTCGGATGCAGTCTCTGGCCCCACTGCCCAACCTCTCCTCTCAGTGTGTGGAGGAAGTTCTTGGAGAGATGCAGCCAGGTTGGTGGAAGATCAACGGGCAGATGGAGCTTCAGTAGTTTTAATACTGGATggaatcacatttttatttattatttttttagtcataaGATTTGACTGATTTTTAATACAAGGACTCTAAGCTGCTTTGTTTGCCTACTTAATGACGACTCAAATCAAATGACTTGAAATGATTGAAATGATCATATGTTCAGAATCTTTTATTTATGATATTGTGGTAATGCAGGTCACACAACAATATCAAACCTCAGACAGAGGAAACTATTTgctctttatatttaatgtggATCTCTTTCAAATAGCAGGTCTCCAAATGACCTAATGCTGCAAGAATCCATCAGTATTTATGACCATTGGTCCTTgttgcatatttattttataatttatttcaccACATTGTTGGGATGCAGGatggtaaaatgtaa

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007015 actin filament organization biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K24896 DUX; double homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669408.1 False 1683 mRNA 0.45 3 4103835 4105753
XM_022669409.1 False 1791 mRNA 0.46 3 4103372 4105753
XM_022669410.1 True 1873 mRNA 0.46 4 4103372 4105753

Neighbor

gene id symbol gene type direction distance location
LOC103037237 adgra1a,LOC108426471,LOC107754080,LOC107675035,LOC107565950,LOC107693584,LOC107563791 coding upstream 32640 4039157 ~ 4070732 (+)
LOC103037557 gabrz,LOC108426470,LOC108273489,LOC107675029,LOC107754081,LOC107565977,LOC107677887,LOC107563789,LOC107743757 coding upstream 100107 3958779 ~ 4003265 (+)
LOC103038101 valopb,LOC103038101,LOC108426422,LOC107566010,LOC107754082,LOC107743790,LOC107677889,LOC107675006,LOC107563788 coding upstream 179141 3910571 ~ 3924231 (+)
LOC103038417 NA coding upstream 205796 3894781 ~ 3897576 (+)
LOC103039243 LOC103039243 coding upstream 224192 3877901 ~ 3879180 (+)
bms1 bms1,LOC107689949,LOC107675025,LOC107566656 coding downstream 2704 4108457 ~ 4132971 (+)
LOC103022011 gfra1,gfra1b,LOC107755550,LOC107702444,LOC107581544,LOC107707958 coding downstream 421192 4526945 ~ 4570849 (+)
LOC103024286 timp2,timp2a,LOC103024286,LOC108274067,LOC107755484,LOC107684079,LOC107565802 coding downstream 693350 4799103 ~ 4819304 (+)
LOC103024595 arl3,LOC102778022,LOC103367836,LOC107684078,LOC103145158,LOC102201386 coding downstream 723285 4829038 ~ 4832548 (+)
twnk cunh10orf2,peo1,LOC107755431,LOC107690904,LOC107565785 coding downstream 825662 4931415 ~ 4937026 (+)
LOC111192351 NA non-coding upstream 94959 4003483 ~ 4008413 (+)
G34188 LOC108426464 non-coding upstream 234877 3864368 ~ 3868495 (+)
LOC103040174 NA non-coding upstream 241923 3853445 ~ 3861449 (+)
G34177 NA non-coding upstream 298795 3802979 ~ 3804577 (+)
G34105 NA non-coding upstream 545881 3545453 ~ 3557491 (+)
G34288 NA non-coding downstream 32002 4137755 ~ 4138153 (+)
G34345 NA non-coding downstream 477965 4583718 ~ 4583977 (+)
LOC111192352 NA non-coding downstream 599160 4704913 ~ 4708973 (+)
G34393 NA non-coding downstream 668133 4773886 ~ 4774852 (+)
G34394 NA non-coding downstream 669268 4775021 ~ 4775341 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 444240 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 2046409 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 2715353 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 3110854 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 3117991 983167 ~ 985381 (+)
G34309 NA other downstream 65298 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 776803 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 1586769 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 2140893 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 2396392 6502145 ~ 6541460 (+)

Expression


Co-expression Network