LOC103032559 (LOC108441169)


Basic Information

Item Value
gene id LOC103032559
gene name LOC108441169
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18332474 ~ 18343461 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669419.1
gatcaGTAGAAAGAAGCTGATAGAAAAACTGGGAGGCAGAAAAGGAAGGAAATCAGCAGAACCATCAAacacaaaatactgaaaatctTCAGCATCCTGCAGACTCCGGACAGGCCTGAAACACTGAGtcatgGACGTGGAGAGGATTATCGAGTGCATCAAACAGCATGATCATGAAGGACTGAGGACGCAGCTACAGCAATTTAATAAAGAGtACGCACAGTGTTTTTTCTTCGATGTGGAGGAGTGGGAGAGGAAGAAgAGGCAGGAGCTTGAAgagTTTAAGAGGAATAAAGTCAGAGATCCAGGTTCTGACTCTGATTTGGATGATGAAAGCTCTGAAGACCGAGAAATCTTTCTGAGACAGAGTTTAGCCTCCATTCTGATCCGTTTCCTGCGGTCCGATCCCCACAGCCGAGTGATCCGGGTCTGCTTGCGTACGTTACGGATTCTGTCTCGAGATAAGAAGGTTCTGGACAGCCTGCTCACCGATTCCTCCCTCATCACTCTCGCCAGACTCGCCGGCTTCAGTCAGACCCCCGACCCCGGAGAGGAGCTCGACGACCAGGCGGACCTGTTCGGGGATGTGATGGAAGCTCTCTCAGGCCTGGACTCGAACGATGGTGAGAACGGAGAGGATGAAGAGCCGAGTGCAGAGAATCCAGACGCTAATAACATCAGCGCCTTGAGGCGAAGAAGAAGCAGCGTTTTCAAAGCTCTCATGAGAGGAAAGAGGGACATCAGGGCGAGTGTGGTGGAGGACGAGGACAAAGACGAGGAGGAGGACGGTAAAGGAGCTCAGAAGTGTGAAGAAGAACAAAATAAAGAGGCTGTGAAAATCCTCTGCAATGTTATTTACAACAGCGCCTGGGCCCAAGAGAGAGCAGCCGAGCTCAGtctcctCAGTGGTTTAACTGCAAAGCTGGACAAGGAGTCTCAATCAGCGTCAACACCAAGTGGTCAATATTATGAACTGCGCCTCATATTTCTGCTAACTGCTCTGAGGCCTGAGCTGAGGAACCAGCTTAAGCAGGAGGGAGGGGTTGTGGTGTTGACCACAGTGCTGGAGAGGTGTGTGTCGGTACAGTGGAAGGAACAGTATGAAGTTGCACCTCTGGAACCCGATGCTGCCCTCGTGTCTGTGGAGGACTCGCTGCGAGCACAGGAAGTCCTGAAGATCCTTTTTAACATCACACACAGCGCACACTCCCAGGACCCAGATGAGGAAAATGCTACTCTCTATCGCCGCCTGGCTGCAGTTCTTCGCCACTGTCTGTTGGTGCGCTGTGAGGGAGAGGAGGAGACTGAGGAGCTGAAGGGACACACGGTGAACCTGCTGTCGGCGCTGCCACTGAGCTGCCTGGACGTGCTGCTGTGCGTTCCCCTGCAGCCAGACTCCGAGCAGATGGACGGAGTCAACATGGACTGTGTTCACAGCCTGCTGGTGTACCTGGAGAGGAGACTGGAGAAGGGGGAGAAGGTGAAGGCCAGACTGACCCCTGTGCTGAATCTGCTCACAGAGTGCTCCAGAGCACACAGAGGAACCCGCCGCTACCTCAGACAGCAGATTCTGCCCCCCCTGAGGGATGTGAGTATGAGGCCAGAGGAGGGAAGCACAGTGAAGAGCCGGCTGGTCAGACTGATGACCCACCTGGATACAGAGCTGAAACACTGCGCTGCTGACCTGCTGTTTGTACTCTGCAAGGAAAATGTCAGGCGCTTTGTGAAGTACACCGGCTACGGGAACGCTGCAGGCCTCCTGGCCACGCGGGGCTTGCTGGGAGGTCAGAGGTCGAAGGGCACGTCATCAGGGACGCGGTACTCCAGcgattcagattcagacaccgAAGAGTACCGGCAGGTGAAGAGCCGTATAAACCCGGTGACGGGCAGGTTGGAGGAGGAGCTGCCCGACCCGATGGAGGGAATGActgaggaggagaaagaggaggaggccCGAAGACTCGTCAGCCTGATCAACAAACTGTCCAAGGACAACATGATTCAGCCAATGGGACTGGACGCTCAGGGTCAGCTGACTCCTCTGGCAAGCCTTAGGGACCTCACAGAGGAAGAAGAGGgatcagaggaggaggaggaggagggagcgGACGACTTGTTAAATGTGGAGTAAAGGCGGGATTGGATGAGGATGATTGACAGTAACTGTGTTTTGTAAATCTGTAGTAGTACGAGAATCCGCCATCAGACTGCAGAGTTAAACTACCCTGTCTGAACCTGACTGTGTTTAAATATCTG

Function

NR:

description
PREDICTED: synembryn-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669419.1 True 2259 mRNA 0.54 14 18332474 18343461

Neighbor

gene id symbol gene type direction distance location
LOC103030877 NA coding upstream 118270 18200351 ~ 18214204 (+)
LOC103047175 LOC108441166,LOC108273636,LOC107557340 coding upstream 146491 18171354 ~ 18185983 (+)
mapk7 NA coding upstream 193596 18128440 ~ 18138878 (+)
LOC103029386 NA coding upstream 292668 18029098 ~ 18039806 (+)
LOC103030008 NA coding upstream 407504 17916864 ~ 17924970 (+)
LOC103034039 LOC108441161 coding downstream 76732 18420193 ~ 18449203 (+)
LOC103021514 NA coding downstream 175447 18518908 ~ 18529955 (+)
LOC103021833 scn4a,scn4aa,LOC108435052,LOC107732174,LOC107654028,LOC107598592,LOC107664628,LOC107708946 coding downstream 190073 18533534 ~ 18583781 (+)
cd79b NA coding downstream 248444 18591905 ~ 18598830 (+)
plekhm1 plekhm1 coding downstream 271787 18615248 ~ 18640148 (+)
G37501 LOC108441156 non-coding upstream 14522 18313306 ~ 18317952 (+)
G37492 LOC108441156,LOC108274106 non-coding upstream 43088 18286903 ~ 18289386 (+)
LOC111192384 NA non-coding upstream 78702 18232596 ~ 18253772 (+)
G37424 NA non-coding upstream 115191 18192610 ~ 18217283 (+)
G37413 NA non-coding upstream 172440 18151368 ~ 18160034 (+)
G37534 NA non-coding downstream 42953 18386414 ~ 18386652 (+)
G37557 NA non-coding downstream 126698 18470159 ~ 18472573 (+)
G37592 NA non-coding downstream 245761 18589222 ~ 18641095 (+)
G37652 NA non-coding downstream 469278 18812739 ~ 18812951 (+)
LOC111192409 NA non-coding downstream 619776 18963237 ~ 18964036 (+)
G37404 NA other upstream 218548 18107564 ~ 18113926 (+)
LOC103046566 NA other upstream 232495 18063983 ~ 18099979 (+)
G37155 ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 other upstream 361475 17961940 ~ 17970999 (+)
G37152 LOC108425993 other upstream 372170 17952580 ~ 17960304 (+)
G37131 taok2,LOC108425925,LOC108273910 other upstream 469408 17857917 ~ 17863066 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other downstream 27917 18371378 ~ 18376345 (+)
LOC103022762 NA other downstream 302174 18645635 ~ 18707728 (+)
G37749 NA other downstream 985907 19329368 ~ 19331661 (+)
G37812 mms19,LOC106578995 other downstream 1137595 19481056 ~ 19484915 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other downstream 1145438 19488899 ~ 19511441 (+)

Expression


Co-expression Network