tnfrsf13b


Basic Information

Item Value
gene id tnfrsf13b
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20725051 ~ 20733671 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669423.1
CTCTGCTCACTCCGCTCACTCCTCTCACTTCTATGGCTACTTAAGgtgtgagtATGGTGAGGAGCGATGGCAGGAACCTGTGCTGGAGGACAGTACTTGGACCGCCTGCTAAAACAGTGCATGCCCTGTCAGCTGGTGTGTGATAACCCTGACCCCCCCACTCGCTGCCTAGACTTCTGTGTGGCCTTCAGCTGTAAGGCTGTATCTGGGCAGTTCTACGACCAGCTGCTGAAGAAATGCTTGAAATGTTCGGAGCTGTGTGGCCACCACCCCTCAGAGTGCTCACAAGAGTGTCCGACTCGTGCTCCCACACCTGGAATCACAAGGCCTGGCAGCATCACTGCACTGCAGCCACGTGACCCCAGGGGGAGCCACAGGCCCAGAGAAGTGCCCCACTCAGAGGTGCTGGTGTACGCTCTGCTGGGCCTGTGTCTGGCCATGCTGCTGGGGACTGTGCTGGTGgccctgctggtgctgctgagGAGAGCCAGGGGGCAGAAGGAGGACCAGGGGGAGAAGGTCCAGCAGCCAGACGGACACAGCCAGACATCTAAAGACTGCCTCATGGCGGACGCTGCGACTCAGGAAGGCGGCGCAGAGGCCCCTGACAGACCCCTGGCGACAGAAACCTGCGTGCATTGCTTCGCTGAGCAGACGGGAACTATGTACCAGCAGGCCATTCCACGATTCCTCAACGGAGAcccccaccaccatcaccaccacaacTACTGCTCTAACGGCCTGGTCCACGGCCATGCTGTCAGGAACACGTGCGAGCGGGACGGCACGCTCAGGATCATTTGCTCGCCCACGCAGACCAGCATGTGAGAGCGGGACCCAGAAACAGCAGCTGGTTTTAGACTGGGAGCCGTCTGAGCTCGCTCAGAACACAGGAACTGAAGAACATTAGACCTTGGGTGGTGTGCATCATAGAGTGTTGGCAAGTTTTGGCATTGTGTGATCATTTAGGCCTTCAAAAAACATACACTACCGGTCAGAAGTTTTAGAACAACCCCAATTGTTTAGTAGTCCAGTAGCAAAAAGTGCAGTATGACCCAAACAACCTGCTTTCTTTCTAATTATTCTCTTCACttctgaaactgagacttagtacaatcatgttaatctgtgctaaaggctaaagctgtttccatgtgggtcagtcagacg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669423.1 True 1170 mRNA 0.55 5 20725051 20733671

Neighbor

gene id symbol gene type direction distance location
LOC103031004 LOC103031004,LOC108274330,LOC108437322,LOC107726267,LOC107653975,LOC107693649,LOC107719927 coding upstream 16194 20702260 ~ 20708857 (+)
LOC103030679 LOC108437319 coding upstream 33325 20689666 ~ 20691726 (+)
LOC103045523 LOC108437318 coding upstream 425490 20294239 ~ 20299561 (+)
LOC103042203 NA coding upstream 875731 19840306 ~ 19849320 (+)
LOC103040580 mapk8b,mapk8,LOC108437314,LOC107709004,LOC106962379,LOC106579004,LOC103040580,LOC108274025,LOC107720002,LOC107388204,LOC107653969,LOC101073575 coding upstream 990374 19708665 ~ 19734677 (+)
nt5m nt5m,LOC107719901 coding downstream 66449 20800120 ~ 20811142 (+)
med9 med9,LOC108412951 coding downstream 128978 20862649 ~ 20865785 (+)
LOC103033426 NA coding downstream 257310 20990981 ~ 20996657 (+)
emc9 emc9,LOC106579550,LOC106590414 coding downstream 264444 20998115 ~ 21002011 (+)
cep55 NA coding downstream 298231 21031902 ~ 21043890 (+)
G37972 NA non-coding upstream 179414 20445849 ~ 20545637 (+)
G37974 NA non-coding upstream 213865 20509679 ~ 20511186 (+)
G37969 NA non-coding upstream 307871 20416873 ~ 20417180 (+)
G37952 NA non-coding upstream 533365 20191412 ~ 20191686 (+)
G37950 NA non-coding upstream 543217 20181576 ~ 20181834 (+)
G38010 cops3 non-coding downstream 50260 20783931 ~ 20790126 (+)
G38059 NA non-coding downstream 141125 20874796 ~ 20875276 (+)
G38062 NA non-coding downstream 169406 20903077 ~ 20981763 (+)
G38081 rbp4 non-coding downstream 310841 21044512 ~ 21083648 (+)
G38093 NA non-coding downstream 397959 21131630 ~ 21139901 (+)
G37943 NA other upstream 566712 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 1213610 19488899 ~ 19511441 (+)
G37812 mms19,LOC106578995 other upstream 1240136 19481056 ~ 19484915 (+)
G37749 NA other upstream 1393390 19329368 ~ 19331661 (+)
LOC103022762 NA other upstream 2017323 18645635 ~ 18707728 (+)
G38079 kif22,LOC107664627 other downstream 285498 21019169 ~ 21030797 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other downstream 375409 21109080 ~ 21128764 (+)
plce1 plce1,LOC107743958 other downstream 432897 21166568 ~ 21296823 (+)
trnar-ccu_1 NA other downstream 3013798 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 3013900 23747571 ~ 23747643 (+)

Expression


Co-expression Network