LOC111192418


Basic Information

Item Value
gene id LOC111192418
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3221347 ~ 3222998 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669429.1
tggttggttgtcgTGTGAACCAATGTACGACTTAAGGAATATGTTGATTCCTTATGTAAATTTTTGTAaatagattttgttttgtttattttttttggttttctttttgttttcttttggtatttttctgcatttgtgCACCTTCACCAAATAAATTCACTTGCACTGGATGTGCTACTGCAGTtgccatcattttttcattcaacCCACAACCTTTTTTCGGCACAACTACCCTCACCTATAAGTAAGGTGTGACAGATGGTGGCAGCGGTGGGATGGCAACATGCAGGACAGTGAAGGTGCCGAAGAGAACTGGTCTTCGTTCACAGAAGGTGGTTCCTGTAAAGACCAAAGCTCCTTCTACAGGATCAGGCACAGGATCGTCCACCTGCTGAGCCGCACAAGTCATCTGGAGTGTCTGAACTTACAGCGGGGCCAGTTTCTCTCCACCCAGCAGAACCGAGAGGAGAGGCTACTTCACGAGTTCCGTGAGTTGAGAACAAGCCTTTCAAAACCACACCTACAACCAGATGAGATGAGCATTAATCCAGGTGCTCCTGCTGCAGCTGGGACTTCAAGGTCTTCAGTGACTTTGTTGTCTGCAGATGACCAGAGTCCCAGAGTGCCTCTTCCCACACCAGCACCCAGACGGCCTCGTCCCTTGGATCTCCCAGAGTTTCCAGAGCCAGTTCCACAACTGGCACAGGGTTTTCACCCTGCAGCAGTTCTCAGCCAGAGACCCAGAGACATTTACCGGACTGAGCCAAAAATGCCTACTTTCCAGGCTGGGGAGGACATTGAGAATTATCTTCTCCGTTTTGAACGTCTGGCAAGGACTTGGGAATGGCCAGTTCAAGAATGGGCTTGCCGGCTTGTTCCGTTGTTGACGGGCAAGGCTCTTGAGGCATATACGTCCATGGATGAGGACTTGTCAAACTCGTATCCAGACCTGAGGGAGGCACTGCTTGCAAAGTTTGACATATCCTGCGAGACTTATCGTCAGCGCTTCAGGGGGAGGTTCACCCCAGCAGGAGAGACACCCAAGGAGACATACCACCGTCTCAAAGGACTTTATCGTAGCTGGATTAAACCAGAACTGCATACCAAAGAAGAAATCGGGGAGTTCATCATACTGGAACAGTTGTCGCGCGTTCTACCAACAGATGTCCGCACCTGGGTCCAGGAGCATGAGCCAGCAAATGGACTGATTGCTGCACAGTTGGCTCAACAGTACTTGAATGCACGACGAGGACTGCCTTGTTCTTCATCAAGACCACAGAGGGACCCAAGACCTACTGAAGGTACTGTCAGCCCTTCTCCAGAGCATGGACCACCTAAAGACGTGCGAGATGGACAGAAAACAAAAGTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669429.1 True 1372 mRNA 0.49 2 3221347 3222998

Neighbor

gene id symbol gene type direction distance location
dhx8 dhx8,LOC107706906 coding downstream 583596 2624938 ~ 2637751 (-)
psme3 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 coding downstream 938363 2276757 ~ 2282984 (-)
chmp2a chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding downstream 1087304 2131018 ~ 2134043 (-)
snf8 snf8,LOC107692042,LOC107734219,LOC107554070 coding downstream 1100964 2117540 ~ 2120383 (-)
LOC103023976 snx11,LOC103023976,LOC108444262,LOC105888804 coding downstream 1133780 2074630 ~ 2087567 (-)
ogfod3 ogfod3,LOC106959269 coding upstream 117614 3340612 ~ 3380599 (-)
LOC103047433 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC107691212,LOC103367354 coding upstream 159777 3382775 ~ 3390578 (-)
myo1d myo1d,si:ch211-94l19.4,LOC107743773 coding upstream 180949 3403947 ~ 3532389 (-)
LOC103046317 LOC103046317,LOC108426453,LOC107565668,LOC107754097,LOC107677886,LOC108274275,LOC107743772 coding upstream 322435 3545433 ~ 3555219 (-)
LOC103044690 osbpl7 coding upstream 526173 3749171 ~ 3770492 (-)
LOC111192350 NA non-coding downstream 31911 3107202 ~ 3189436 (-)
G34036 NA non-coding downstream 135941 3060369 ~ 3085406 (-)
G33944 etv4,LOC107743788 non-coding downstream 618158 2574387 ~ 2603189 (-)
G33939 NA non-coding downstream 677236 2515287 ~ 2544111 (-)
G33910 NA non-coding downstream 853607 2362350 ~ 2367740 (-)
G34101 NA non-coding upstream 168631 3391629 ~ 3399113 (-)
G34159 NA non-coding upstream 505644 3728642 ~ 3728960 (-)
G34166 pnpo non-coding upstream 554902 3777900 ~ 3781741 (-)
G34218 rnf40,LOC108273672,LOC107743762,LOC107677883,LOC107563784,LOC107565773 non-coding upstream 617005 3840003 ~ 3842727 (-)
LOC103038927 NA non-coding upstream 657584 3880582 ~ 3883412 (-)
G34046 NA other downstream 26970 3181168 ~ 3194377 (-)
G33904 NA other downstream 912018 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 1025252 2194757 ~ 2196095 (-)
G33823 srcap other downstream 1044288 2169023 ~ 2177059 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other downstream 1179044 2022071 ~ 2042303 (-)
prr15l prr15l other upstream 560127 3783125 ~ 3789192 (-)
G34214 NA other upstream 613623 3836621 ~ 3883469 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 1748700 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 2032621 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 2680590 5903588 ~ 5928154 (-)

Expression


Co-expression Network