G52518


Basic Information

Item Value
gene id G52518
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3081991 ~ 3082437 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU59836
TGCCTTAACTCTCTTGGGCATAGAGTTCACCAGAGCTTCACAGGTTGCCACTGGAGTCCTCTTCCACTCCTCCATGACGACATCACGGAGCTGGTGGATGTTAGAGACCTTGTGCTCCTCCACCTTCCGTTTGAGGATGCCCCACAGATGCTCAATAGGGTTTAGGTACCTTCAGCTTCTTTAGCAAGGCAGTGGTCATCTTGGAGGTGTGTTTGGGGTCGTTATCATGTTGGAATACTGCCCTGCAGCCTAGTCTCCGAAGGGAGGGGATCATGCTCTGCTTCAGTATGTCACAGTACATGTTGGCATTCATGGTTCCCTCAATGAACTGTACCTCCCCAGTGCCGGCAGCACTCATGCAGCCCCAGACCATGACACTCCCACCACCATGCTTGACTGTAGGCAAGACACACTTGTCTTTGTACTCCTCACCTGGTTGCCGCCACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU59836 True 447 lncRNA 0.48 1 3081991 3082437

Neighbor

gene id symbol gene type direction distance location
CI01000009_03009238_03025860 NA coding downstream 56054 3008360 ~ 3025937 (-)
CI01000009_03006152_03007243 NA coding downstream 74136 3005386 ~ 3007855 (-)
CI01000009_02975388_02982670 NA coding downstream 96600 2975388 ~ 2985391 (-)
CI01000009_02916137_02917550 FUNDC1 coding downstream 164441 2915641 ~ 2917550 (-)
CI01000009_02904768_02914992 EFHC2 coding downstream 166744 2904691 ~ 2915247 (-)
CI01000009_03140599_03143635 SLC35A5 coding upstream 58162 3140599 ~ 3143635 (-)
CI01000009_03171440_03194494 DCAF6 coding upstream 89003 3171440 ~ 3195145 (-)
CI01000009_03226613_03234223 ME3.L, ME3 coding upstream 143331 3225768 ~ 3234223 (-)
CI01000009_03235111_03242103 NA coding upstream 152577 3235014 ~ 3242103 (-)
CI01000009_03244366_03259106 ILDR2 coding upstream 161161 3243598 ~ 3259106 (-)
G52566 NA non-coding downstream 10603 3071161 ~ 3071388 (-)
G52557 NA non-coding downstream 32338 3049098 ~ 3049653 (-)
G52556 NA non-coding downstream 35894 3045889 ~ 3046097 (-)
G52503 NA non-coding downstream 48314 3027695 ~ 3033677 (-)
G52553 NA non-coding downstream 86086 2995649 ~ 2995905 (-)
G52589 NA non-coding upstream 65491 3147928 ~ 3149432 (-)
G52494 NA non-coding upstream 67826 3150263 ~ 3156146 (-)
G52496 NA non-coding upstream 120328 3202765 ~ 3207426 (-)
G52521 NA non-coding upstream 138295 3220732 ~ 3221942 (-)
G52593 NA non-coding upstream 140195 3222632 ~ 3222961 (-)
CI01000009_02885473_02893975 NA other downstream 182584 2883688 ~ 2893975 (-)
G52410 NA other downstream 519458 2551724 ~ 2562533 (-)
G52098 NA other downstream 1674364 1401932 ~ 1407627 (-)
CI01000009_03261739_03262843 NA other upstream 178766 3261038 ~ 3262843 (-)
G52828 NA other upstream 1134983 4217420 ~ 4231469 (-)
G53515 NA other upstream 2419958 5502395 ~ 5505248 (-)
G55814 NA other upstream 5343384 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 5775715 8856310 ~ 8860563 (-)

Expression


Co-expression Network