LOC103040920 (sdk2,sdk2b)


Basic Information

Item Value
gene id LOC103040920
gene name sdk2,sdk2b
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 9829485 ~ 10373341 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669431.1
GAGAGCGTTACCGGTTTCTTActggataacacacacacatacacacgcacaccgGAGCTCGAGCTCAGCTGGAGGCGCGCGGGGGGCCAGAAGCTGCTGTGTTTACCGGACAGGAGTTAGTGGAGTTAAATGAATGGGCGCTCTCGGTGACGCGCGCGCGGTCATGTGGAGCGGCGTTTTGACGGACCGGGAGTGAGACGCGCACGCGGGGAGCACGGTGTGAGACGCGGTTGGGGCTCGGTGTGTCGGAGGCGCAGTGGAGCGCGCGCGCTGTGGACTGGGCTGTACTGGAGCGCCTGCGGTGAACTGGTTGTACTGGACGTTACTGGACTGGGTGTACTGGGCTGGACTGGGAGTCGCGATGGAGCGCGTGGAGCTGTGGGTCAGAGGAGTTCTACTGGTGACCGTCATCCTCACACACATCAGCTCAGCACAAGatgaCGTTCCTCCGTACTTTAAAACAGAGCCGGTTCGGACTCAGCTGCACCTGGAGCGGAACCGGTTGGTTCTGACCTGCATGGCTGAGGGCAGCTGGCCACTGGAGTTCAAATGGATTCATAATGAAACAGAACTGACCAGCTTCTCACTGGAatacaggTATCTGATCCCCTCTCTGGATCGTACTCATGCTGGATTTTATCGCTGTATAGTGAGGAACCGTGTGGGAGCTCTGCTGCAGCGCAGGACGGAGGTTCAGGTGGCCtttatgGGAGGGTTTGAGGAAGGTGAAAGGGTGCAGTCTGTTTCTCAGGGCGATGGTGCGGTCATCCCAGCCCCCCGGATACGGAGTTTCCCGCAGCCGCCGCAGGTCACATGGTTCAGAGACGGCAGGAAAATCCCACCCAGCAGCCGCATTGCCATCACACTGGAGAACACGCTGGTGATTCTGTCAGCGGTGGCGCCAGACGCTGGACGATACTACGTTCAGGCTGTGAACGACAAAAACGGGGAAAACAAGACCGGCCAGCCCATCACACTGACCGTGGAGAaTGTTGGTGGTCCAGCTGACCCCATTGCCCCTACCATCGTTATTCCACCCAGGAACACCAGTGTTGTTTCTGGGACGTCTGAGGTCACCATGGAGTGTGTAGCCAATGCTAGgccATTGATAAAGCTGAGTATCAGTTGGAGGAAGGATGGTGTTCCGGTTCGCTCTGGTCTGAGTGATTTTAACCGCAGGTTGACGGTTCTCAGCCCCACTGTGGGTGATTCAGGGTTCTATGAGTGTGAGGCAGAGCTGAAGAGCAGCAGTGTGCCGTCTGTTAGCGCTGGAGCATATCTGCATGTGCTGGAGCCCCCGCAGTTCGTGAAGGAACCAGAGAAGCACATCACCGCTGAGATGGAGAAGGTGGTGGATATTCCCTGCCAAGCACGAGGTGTCCCCCAGCCTGATATAGTGTGGTATAAGGATGCAGTACCTATAAATCCAGTGCGGTTGCCGCGGTATCGCGTGCTGGCCGGTGGGAGCCTGCAGGTTAACGGGCTGCTGCCGGATGATACGGGGATGTTCCAGTGTTTTGCTCGCAATGAGGCCGGAGAAGTGCAGACCAACACCTACCTCGCCGTCAccagCATTGCCCCGAACATCACAGCTGGTCCGTCAGACAGTACTGTGATTGATGGAATGTCAGTTATTTTACACTGTGAGACGTCAGGAGCACCGCGGCCTGCTATCACTTGGCAGAAAGgCATTGCCCCGAACATCACAGCTGGTCCGTCAGACAGTACTGTGATTGATGGAATGTCAGTTATTTTACACTGTGAGACGTCAGGAGCACCGCGGCCTGCTATCACTTGGCAGAAAGGTAagATGATGACCAGaagctctatctctctctcttcctctctctctctctctctctctgcagctcgTACTCGGATCACCACTCCTCCTCAGGATCAGAGTGTTATTAAGGGAACCAAAGCCACACTGACTTGTGGAGTGACCCATGACCCCAGTGTGAGCGTGAGGTTCGTATGGGAGAAGGATGGACAGGTGATGAATCCAAAGTCATCGCCACGGTTACGGCTGGACGGTAACGGAACGCTGCATATTTCCCAGACATGGTCAGGTGACATTGGGACCTACACCTGCAGAGTAACCTCAGTGGGAGGAAATGACTCCCGCTCTGCACACCTGAGAGTCAGGCAGCTGCCGCATGCTCCAGAGAACCCGAGTGCAGTTCTGAGCTCCACAGAAAAGAGGTCGATTAACCTGACCTGGGCCAAACCATTTGATGGGAACAGCCCGCTGATCCGTTACATGCTGGAGGTGTCTGAGAACAATGCTCCGTGGATGATTCTGTTGGCTAATATTGAGCCAGAATCCACAGCGGTGACGGTGAGTGGACTGATCCCGGCGAGGTCCTACCAGTTCCGCCTGTGTGCTGTAAACAACGTGGGGAAAGGACCATTCAGCAAGGAGACAGAACGGGTCTCTCTCCCAGAGGAACCCCCCAGTGCCCCCCCTCAGAATGTCATTGCCAGTGGCCGAACCAACTCCTCCATCATGATCCAGTGGCAGCCTCCCCCTGAGAGCCAGCAGAACGGCGTGCTCCGAGGATACGTCATCCGCTATCGTCTAACGGGTCTACCAGTGGACATCCAGTACAAGAACATCTCCAACCCAGATGTCACCAACCTTCTCCTAGAAGACCTCATCATCTGGACCAACTACGAGATCGAGGTGGCGGCGTATAACGGAGCTGGCCTCGGGGTCTACAGCCACAAGGTTACAGAGTGGACGCTTCAAGGAGTTCCCACTGTTGCTCCTGGGAATGTTCAAGCTGAAGCTGTGAATTCCACCAGCATCCGTTTCACCTGGGCAGCTCCCAACCCTCAGTTCATCAACGGCATCAACCAGGGCTACAAGCTGCTGGCATGGGAGCCGGGTCAGGAGGAGGAGGTTACGATGGTAACAGTCCGCCCAAATTTCCAGGACAGTGTTCACGTGGGCTACATCAGCGGACTGAAGAAGTTCACTCAGTACTACACCTCAGTGCTGTGCTTCACCACGCCGGGCGACGGCCCCCGCAGTGCCGCAAAGAGGATACACACACATGAAGACAcTCCAGGAGCTGTGGGTCATCTAAGTTTTACAGAGATCCTGGACACGTCTCTGAAAGTCAGCTGGAGAGAACCTAATGAAAAGAACGGCGTTCTCACCGgttaTCGGATCTCATGGGAGGAGTATAACCGCACCAACACCCGTGTTACACACTACCTCCCCAACGTCACTCTGGACTACAGAGTTACAGGACTGACCGCTCTGACCACTTACACCATCGAGGTGGCGGCAATGACCTCTAAAGGCCAGGGTCAACTCAGTTCATCCACCATATCATCAGGAGTACCACCAGAGCTTCCCGGTCCACCGACTAATTTAGCAATCTCCAACATCGGCCCGCGCACCGTCACGCTGCAGTTTAAACCGGGCTACGACGGAAAAACCTCCATATCTCGCTGGCAGGTGGAGGCCCAGATCAGTGTGGTGGGAGAGAATGAGGACTGGGTGATGGTTCACCAGCTGGCTAATGAACCTGATGCCCGCTCACTGGAAGTGCCTGCTCTAAACCCCTACACCTTCTACAGGTTTCGCATGCGTCAGGTGAACATCGTGGGCACCAGTCCTCCCAGCCAACCTTCACGAAAGATCCAAACCCTACAGGCTCCTCCTGACATGGCTCCAGTCAATGTGACCCTGCGGACAGCCAGCGAGACCAGCCTGTGGCTCCGATGGGTGCCTCTGCCAGAGTGGGAGTATAATGGTAATCCAGAGTCGGTGGGCTACAGGGTTCAGTACAGTTGGACCGGCCCACAAGCCAAAGCCCTAATCCACCGGATTCCTGACCGCCTGGAGAGGGAGTTTACTATAGAGGACCTGGAGGAGTGGACAGAGTATGAGGTTAAAGTTCAGGCCATCAATGGAATCGGGGCTGGACCTTGGAGCCAGCCCGTACGAGGACGCACCAGAGAGTCTGtTCCCTCTTGTGGACCCACCAACGTCTCGGCCTTCGCCACGACCTCCAGCAGTATCCTGGTGCGCTGGTTCGAGGTTCCTGATCCAGACAGGAATGGCCTCATTCTCGGCTATAAGGTCAGCAATGCTGAAATTAAtgaaaagtattgggacacctgctcatttaatGCTTCTTTTATTCCAAATTCACTGGTTATCAACAAGAATGTTAGTTGGGtgaggatgttggatgatcaccactccACCCATCTCCTATCTCTCCCAGTCAAAAGTACCTATCAGATCACATATCGCCTCAACTCCACCAATAGCAACACGGCAACGGTGGACGTATTGAACCCCAGCGCTCGTCAGTACACGGTTACTGGGCTTAAACCAGAATCTGTCTACGTATTCCGCATTACCGCTCAAACACGCAAGGGCTGGGGGGAGGCGGCGGAAGCCCTGGTGGTCACCACTGAGAAACGAGCTCGACCCCAGCCCACCAGTCGTCCCACAGTGCCGCAGGAGAACGTACAAGCACGCAGTGTCCTGCTTTCCTGGGAACCCGGCAGTGACGGTCTCTCTCCGGTCCGGTATTACACGGTGCAGGTCCGAGAACTCCCCAGCCGGAACTGGACCGTCCACTCAGCATCCGTCAATCACGACTCAACATCGTACATCGTGGACAGGCTGAAACCCTTCACCTCCTACCAGTTCCGAGTGAAGGCCACTAATGATATTGGGGACAGTGAGTACAGCGAGGACAGCGAGGCTATAACCACCCTGCAGGATGCTCCAGATGAATCTCCCATTATCCTCTCTGTCACGCCACATACCACAACCTCTGTTCTGATTCGCTGGcagGCCCCAGCAGAGGAGAGGATAAACGGGATCCCACTGGGTTTCCGTGTCCGGTACCGAGAGCTGCTGTATGACCGTCTACGCAGCTTCAGCGTCCAGCCCATCAACAGCCCATCTACCAGCTGGGCCGAACTCACCTctcCATACAGTATCCGCAACCTCAGTGACCCCTCTATCACCCAGTATGAGCTGGAcaACCTATCCAAACACAAGCGTTATGAAATCAGACTGAGTGTGTACAACGCTGTGGGGGAGGGACCAACCAGCTCGCCACAGGAAGTGTTTGTGGGTGAAGCAGTGCCAACTGCTCCTCCCCAAAACGTGGCCATCCAATCATCTACCGCCACACAGCTTGACATCACATGGGACCCACCTCCATTGGACACTCAGAATGGAGACATACAGGGCTATAAGATTTATTTCTGGGAGTTCCAGCGTAAGAACGAGACAGAGAAGCTGAGGACTCTCTTCCTGCCTGAAGGAGGGGTCAAGCTGAAGAACCTGACGGGCTACACCACCTACATGATCAGCGTCGCCCCCTTTAACGCAGCTGGAGATGGGCCTCGCAGTGCCCCCACAAGGGGGCGTACTCAGCAAGCTGctcccAGTGCTCCAAGCTTTATCCACTTCAGTGAACTCACCACTACATCTGTGAACGTGTCCTGGGGTGAGCCGGTGTTCCCCAACGGAATCCTCGAGGGATATCGCCTCATCTATGAGCCCTGCACTCCTGTTGATGGAGTCAGTAAGATAGTGACGGTGGATGTGAAGGGAAGCGCCCCcctatggctgaaaattaaaGACTTAGCCGACGGGGTTACTTACAACTTCCGCATCCGTGCCAAAACCTTCACCTACGGGCCGGAGGTGGAGGCCAACATCACCACTGGACCTGGAGAAGGTGCCCCAGGACCCCCTGGTGAACCGTTCATATCTCGTTACGGCTCTGCCCTCACCATTCACTGGACTAACGGTgatcccggacgagcccccaTCACGCGATTCGTCATTGAGGCCAGACCTTCTGATGAAGGTTTGTGGGATATCTTGATCAAGGATATTCCTAAGGAAGTGACGTCATACACGTTTAACATGGACATCCTGAAGCAGGGGGTCAGCTACGATTTCAGAGTCATCGGAGTCAATGACTATGGATACGGATCGCCAAGCCAACCGTCTCCGTCTATTTCAGCCCAAAAGGTGGCACCATTTTACGAGGAGTGGTGGTTCCTGGTGGTGGTGGCGTTGGTCGGCCTTATCTTCATCTTGCTGCTGGTCTTCATCCTCATCATTAGAGGCCAAAGCAAGAAATATGCCAAGAAATCAGACTCAGGCAGCAACTCCAACTGCAAGTCTCTGACTCATGGAGAGATGGTCAGTCTGGACGAGAGCCGATTTCCTGCTCTGGAGCTGAACAACCGCCGACTGTCCGTCAAAAACTCCTTCTGCCGCAAGAACGGCGTCTACACCAGGTCTCCCCCAAGGCCGAGTCCTGGTGGGCTGCACTACTCTGATGAAGACATCAGCACTAAATACAACGACCTGATTCCAGCTGAGAGCAGCAGCCTGACCGAGAAACCCTCTGAGATATCAGACTCACAGggaaGCGACAGCGAATACGAAGTGGAACCGACTCAGCAAAAGACGCACTCCTTCGTTAACCACTACATCAGCGACCCCACCTACTACAACTCATGGCGCCGTCAACAGAAGGGCATTTCTCGGGCTCAGGCCTACAGCTACACCGAATCCGAGTCCGGAGAGGCCGAGCACACCGCCGTTCCCCCGCCGCTGCCCCCGCTGCCCccccagcctcagcctcagccccAGCCTCAGGTCCAGGTCCCACCGCAGACCCTGAGCCAGAGCCAGGCCAGCCTCTTTAGGCCCAAAGGCAGCCGGACTCCTACTCCATCCCAGCAGAGCGCTAACTCGCCCAGCCAGCAGGGGCCGCTCTACCGGCCCCCCAGCAGCCTGGCCCCTGGCCCGAGACCACCCATCGCTGGATTTTCTTCTTTCGTCTGATTGGATAAATGAGAAAGGAAGATTTAAAGTGGAGGAGGAGGGGCCTGTCCTGCTCTTTTCTCCTCCCAAAACAAGCCTCCCAAGCCTAATTTGTCTAATGTGTCTCGATTGGAATGCCAACAAACATCAACAGCAGCtagatatttcttttttttcttttataatgtcgattttctttgtttttcttgctttgagttggatttttttttattttg

Function

symbol description
sdk2b Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; retina layer formation; and synapse assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in synapse. Is expressed in ciliary marginal zone; retinal ganglion cell layer; retinal inner nuclear layer; and retinal outer nuclear layer. Orthologous to human SDK2 (sidekick cell adhesion molecule 2).
sdk2 Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; retina morphogenesis in camera-type eye; and synapse assembly. Predicted to be located in plasma membrane. Predicted to be active in synapse.

NR:

description
PREDICTED: protein sidekick-2 isoform X8

GO: NA

KEGG:

id description
K16353 SDK; protein sidekick

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669431.1 True 7062 mRNA 0.55 43 9829485 10373341

Neighbor

gene id symbol gene type direction distance location
LOC103043335 npffr1 coding upstream 561889 9220731 ~ 9267596 (+)
LOC103022911 LOC108413183 coding upstream 621801 9177238 ~ 9207684 (+)
LOC103023541 LOC108441018,LOC107709014,LOC107595168 coding upstream 800330 8994443 ~ 9029155 (+)
pald1 pald1 coding upstream 1125888 8599182 ~ 8703597 (+)
LOC103030936 bambi,bambia,LOC107749375,LOC107676764,LOC107584374,LOC108274338,LOC107549411 coding upstream 1342034 8482871 ~ 8487451 (+)
cdc42ep4 NA coding downstream 11671 10385012 ~ 10424245 (+)
LOC103039374 NA coding downstream 63982 10437323 ~ 10441938 (+)
trim65 trim65 coding downstream 103049 10476390 ~ 10485798 (+)
foxi2 foxi2 coding downstream 667357 11040698 ~ 11042893 (+)
ptpre ptpre,LOC103359937,LOC107387775 coding downstream 811549 11184890 ~ 11217372 (+)
G35609 NA non-coding upstream 123183 9706049 ~ 9706302 (+)
G35554 NA non-coding upstream 374668 9454482 ~ 9454817 (+)
G35552 NA non-coding upstream 375317 9453869 ~ 9454168 (+)
G35539 NA non-coding upstream 400107 9424975 ~ 9429378 (+)
G35533 NA non-coding upstream 423275 9371570 ~ 9406210 (+)
G35748 NA non-coding downstream 113774 10487115 ~ 10488053 (+)
G35794 NA non-coding downstream 360437 10733778 ~ 10734007 (+)
G35810 NA non-coding downstream 474546 10847887 ~ 10848371 (+)
G35825 NA non-coding downstream 705531 11078872 ~ 11079443 (+)
LOC103033033 NA non-coding downstream 716951 11090292 ~ 11264386 (+)
LOC103024481 adamts14,LOC103367006 other upstream 978093 8719354 ~ 8851392 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other upstream 1356496 8442132 ~ 8472989 (+)
fasn fasn other upstream 1390620 8386173 ~ 8438865 (+)
G35021 NA other upstream 2925488 6902417 ~ 6903997 (+)
G34931 NA other upstream 3098061 6730954 ~ 6731424 (+)
G35744 mrpl38 other downstream 98039 10471380 ~ 10475783 (+)
dock1 dock1,LOC107740868 other downstream 374296 10747637 ~ 11001805 (+)
G35903 NA other downstream 1428117 11801458 ~ 11802204 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other downstream 1738349 12111690 ~ 12566941 (+)
G35967 NA other downstream 1993199 12366540 ~ 12370962 (+)

Expression


Co-expression Network