LOC103028243 (LOC108431941,LOC107584177)


Basic Information

Item Value
gene id LOC103028243
gene name LOC108431941,LOC107584177
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17213596 ~ 17232139 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669437.1
GAACGCAGCGTTTACTTTCAACCAGCGGCCATCCGCCTTTAGGACCCCGCGGTCTGATCAGCGGCCCGATTAAACTTGAGCGCAACTTGGACAAAACCGACTGGGAAGTATCACATGTTCCGTCCAGATTCTTCAACCGTATTTTGGAAGCAAGTGGACACTTCTAAAAGCATGAttttagaagaataaaaaacatcacGCGTCTCTTCTTTGCAGCTCGACTTTGCCTGGATTTCACGTGTGTTAAAGCAGACTGTGGGAGTGAGCTCGGCTTTGCCCTTTAGCTATGGACCCAGAAAGACAGAAGCGCAAGGAAGAAATAGAAAAAGCTCTTGGATTCATACACAGGTCGTCTTTGCCTTTTCCTGATCCTGAAGGTTATGAGGCATTTTTGACTCAGTTAGTGTGTAATTTGCTGGACGAAGGTAACACAGTCTTTCGTGATGGAGATTGGAGACAGGCGGCCTCACATTACAGCGAAGGTGTAAACGTAGCCCGCTATGCCCAGTCTGAAGCATTGGTGATTCCTGCAGAACTGCTGGAAAGTCTGTATGTTAACCGGGCAGCTGCACACTATAGTCTAGGTGAGTATGAGCGAGGGGTGCAGGACTGTGACAGCGCGCTGTGCGTGTCTGAGGGCAGTCGTAGGGCACTCTACAGGAAGGCCCTGTGCCTTAGAGAGCTGGGCCGGTTCAGAGAGGCTTATGAGTGTGGCACTGGCTGCTTGCTCACTGCACCTCATGACAGACAAGTCGGTGAGTTGGCTCAGGACTTGGCCAAGAAACTTGGCCTGAAAATCCGCAAAGCCTACATCAGCTCCCAGGGTGATTCTACAACATCTCAGCCAGATAGTAATGGAGAAACTCCTCCTTCTACAGGAGAGACGTCTTCAAACGGGCTTGAGTCTGTGACAGAGACTGGATCAGAAAATGCCCAGTGCATCCCTGCACCATTGGCTACTCCAATTCCAGTCAGTGATGATCCTCCAATGCCACCACTAAGTCCAATAGTGCCCCCGGAGACGCCCGAGAGCCCGAGCCAAGGGCCCACGGGGCGGGTACAGTATTCTGTGCCAGTTTCAGAGCAAATGGGTGAATGCGTGATAAATGAGGATCTGGAAAGCCTGCTGGAAAACATTCCTAAAGGAGCTGAGGTCAGCGTGAACCCAGTTCAGGGTGCCATTCCTACTAACCTTCCAAACACAGCAGTGGGTTTGCGTCCTCCCTACCCCTCTGGTCTCCCACCTTCTTCCTCCCAGCTCACCCCCCCTTATTTTGGCTCTGCTGTCAGCCCCCTCACTCAGCTGGACTCTTTCTCCACACTTGGTCAGAGTGAGAGTTCCACACAAGCGATGGAGTCTCTTATCCCTTTTGGTTCTGCGTCTGGGGCTGCAGACGCTGCAGGGAGGGCTAGAGCTGGATCACTGAGCACGGAAGGGCTTGACTCGCTTTCTGAGTACACACTGCCAGGAGGAAGAATCAATACCAGTTTCATCCCTGGATTACGCAACCATGCCATCCATACGAATGGTTCAGCTGCCACTAACCTTTCACTGCTGTCCCGCAATCCACTGGCTGCCACCCACGAGTTCAGACAGGCCTGCCATGCCTGCTACAGTCGGATAGGTCCCCGGGTCATGGATTACAAGTACCAGCCTGAAGCAGCTCATCGCTGTAAGAGAGATGTGCTGCTCTGCCGCCTCAAGACCTCAGACGACACCACTTGGAAGAGGATACGACCTCGCCCTGCCCGCAATAATTTCTTAGGAGCATTTGTTCTCTgcaaaggtatttttttttgttacagtgtGTACCATGTCTGTttattttgggggggggggctctgttgcctgacacacacacatcccttaGGAATGTACATATGTTTTCAGCAACATACACTGCAAGAACTGATTGTTGTTCTTGGTAGTATTGTATTTCTACAGTCGCTGACATTTAATTCATTCGGTTGGACCATCAGATTCAAACCTCTTTTTGTGCTTTCTGGCAGGTGCCTGGTGCACGTGGTCCGCTCAGCCAACGTGCGCTACAGTAAGATTCGGCCGCTGCACCCATTGTGCCAGTTCGATGTGTGTCGCCATGAGGTGCGCTACGGTTGCCAGAGAGAAGACAGCTGTTCCTTTGCTCACTCAGTCATTGAGCTTAAGTGCTGGGTGCTGCAGCAGGACACAGGTATTACTCATGAGGAGATGGTACAGGAGTCTAAGAGACACTGGCAAAGACTGGAGCAGAATGCTCAGCGGCAGAAGCCCATGCATGTGCCtcatcacaccagcagcagtagcagcagtgcTGTAAGTGCTGGTGTAGGGAGTGGAGGAGTGGCTGGAGGTGGTGGTGACGGCATCGGAGGCGGCGGCTCAGGGGGAGGCAGCTGTGGCCGAGGTCGTGGGCTTAACCTGAAAATGAAGtttgtgtgtggtcagtgctggAGGGAAGGCCAGGTCAATGAGCCGGACAAGGCACTGAAATACTGTACTGCCAAAGCTAAACACAGCTGGACAAAAGAGCGCCGGGTGCTGTTAGTAAAATCGTTTGAGAAGAAGAAGTGGGTAGTAGTACGACCTCTGCCTTTCTCTCGGACCTACCCCCAGCAGTATGACATGTGTGTTCACGTGATGAAACAGAAGAAGTGCCACTACATTGGGAACTGCTCTTTTGCGCACAGTTTGGAAGAGAGGGATGTGTGGACCTACATGAAGAACAACAGTTTGAGAGACATGCAGCAGATGTATGATCTGTGGTTATcgttaaccaatcagaaccgtCGACCAGATGGCACCCTGATGACTCCCCCTCCTGAAGAGAAACCCAGCACTATGCCAGCTGACTACACAGAGGCAATGGCTGGGCAGCGGTTGTCGGGGAGTGGAGATCTGTGATCCTGGCCAAAGTGTTGAGTGGCAACCATGCGGTGACCTGGATGAGGCTTCCTGCAACAAGATTCAGCCATTCTCCAGATGTCAGTTTGTATGCCCTTGTTCCTTTCGGTGCAAATAGGAAGCACTTTGTCCTCCTGCACTGCGGACAGCCTGACTGTAGTACTAATGTGGTGATCGTGAACATGCACGCACATACATGCTTTCTCATTAATGCCCAAATGTTCTTATTCACTGACATTACATCAGGCTGCAAATACATGCCATGTCATTTGACAGCCTATGTAATTTCTGGCCTATTATGAAGGCCAAAAATAAAGATgccaattaaacaaaaattaaacatttatttgcccCTCCTAATACTATGCTATTTAAACTTGTGCTCAGGCAAATGCCAACTAAGTCCCCCAACTGACCAACTGTTTCATTAGAGTGCATCATATCAGACAGCGGAACAAAAGCTAACTGCTTTCTAAGTAGATTTCTATGatttcccccagcattttattgaATGAGTGGtgcctcactctctctacctGCCATATTGGCAGAACAAATCTGAATGTATAGCCAGCAAAAGGCCATGAATAAGAATGTAGAATGTATTAGAGACACCttggcaaaacaaaaaaaatagttgataaaaataataataataaatcccttCTTACCCCTTCTTGCGTTTTCTTAACTCATAGAGCTAGCATGTAGGTTTACTGCTTGTGTAACTCCACCTGCTAGTCTTGCGTGCACGTACATGCATTAACATTTAGTTTGCACTGAGCGAGCTGTAAAAGAGGCAGTGTTTGGATGATGCTGAAGAACTATTTGCACAAAGTGATGAGGGCAATAGTCTCTGCTGCTTCACTCTAGTGGGATCTAGCTAGTCTTATTTAAGCTGTTCAGAAGCTGTATTGTTGTAGGCTTTTGAGATGAGAAGCAATTTAAAGAGGGCAAGTGATTGGATGTAGTTTTGTTTAGGCTTATTGGACCCTGTGCTTTTGGAAGCTATGGTGAAATATTTGAAACTCGCAGGGTTATATATTACGGTTCAGTCATGAATTCTTTACAGTTCAGATTGGGTCAGAACCACCACCACTATTAGTATCTGGTGTTAGTTGATTTTTAGAGTCAAACTTGCAAGGAAGTGGGCAAACAAGCTCATGCGTGGTGTGCCTATGCGTAATTATATTCCCTCCAATAATAATATATCCTCACAGCATACCTTGTTATCTTGCTAGTAAGTCTGCCTTTGTGGTGGACGTAatgtatacacatacatacaaacatacatacatatttactaTATCGGTATACTACTAATGATTATTGATAACTTAGCAGTTAAGCTTAATTAAATATAACCTGACCTTGTATTGATTATATAGAACCTCTTGTTATTGAGCTATGCTATATGAACTGTATTGCTGAATAGATgattagtgatttttttttttttctttggctttCGTGAGGGTCATTCCAGAAAAGCTTGGATCTGTAAGCTGTTCCCAGCCCAAACTGCCACAATAGAgaaggtaataataataaaaagtgtatgaagCTGGAATATAATTCAGTAAGAATATGATAAAGGGGCAGGATTTGTAGGGAACCAAATTTGAGTTTAACTGGAAAGGAATATTTTGAAGGATTTTCTGGAATGGCCTAGATGTATGCTTCTCTGAGGGATcgtattattactactactattactactattattatgatGATAATGATTGCTATTATGACTATTTCTATCCTCCTATATTCTAttgatatatgtatatgttaatTGCAATGTATAACTCtctctttaaatatatgtatccatgtatgaatataaaaaacttAACAGTGAATAGTCTATGTATGCTGAGTCACATTTTCAGTTTAGGGAAGGGAGACTGTAGATACATGTGCTTGAGGTAATATGATGCTTATGATTTAGTTTGTATTTAAACTGGAATAGAAGTGGAAAGATTGTCCCATTGGACCTGGTTTAGCGCAGGTTATGTTACAGAGTCCACTCTGTGTTTTAGttggcgtgtctttagttttgGACTTTAGTATCAGTGGTCGAGAAATTGTTTCCTGTAGAGGAGAGATTTCAGGAtttttggttggttgtttttctttaaatgcaGTAAGACTTAATTCTGATACTATGTTATTGAGCTATTCTACTCTTCCAAGGCCTTTAGTTGTGATAAACCTCAAGCACATGTATTTGTCAGCTGTATCGTAAGAAAATACTAAGCAtacatatttgtttgtttgcatagcgccttatacaatataaacatatatacagttataaatATCCTAACATGTATAATCTTTCCCCTtcagtatataattatatacacacttAGACAACTTGGATAAGAAAATAGATGCAAGGTGATGGatgtgtgtttcttttgttttttttttttttttttttttcgtaactTCCTCTGTTGGCTGTTTGCTGAAGTCAGAAGCTAATTTGATCGGTTATTAATGGCATGCGACACGAGCTCTAGAGTATTCTCGTGGGTTGTGGATCCAGTGGATTGTTGGTCGCATTTCACAGCGATTTTGATGCCGTTTAAGCTTTTGGCCGAAGCTAGACAATCAGAGAATGTGTCAGTAAGCTAAGAGAAAAGGACAGAGAGGTTTAGTCTATAGATACCGTCTCAGTCATGATAGTGTTTGTAAAGAGTCATATCAAATGATAAGAATCTCTTCCCACCAGCTAGTCAAGGGGCTAGAAAGAACATTATCCACTCGAACCAACCCACCCATACACACCCACCCCACCAACCCATCCATTGTTTTCAACTCGAGTTTACTTCATTTAAATGTGAACTAGTAACTTTCTATACCATCTTGGACTTGGACCTCTAGCCAAGTATGTTAAAATCAGTGAGGAAAGATTGCACATGGTTAAATGACCTTTGCGTTTAATGCCCTCTAACCTCTGTCTTGATGAATGGGAGATGTGATTGTACCAAATTCACCCTGAAAAGACTTGTCTTTTCTACAGAACATGAATATACACAGTTAGATTGATGTTCAAAATGCTGTTTCTGTCAAAAGTTATTTTTCAACTGCTTGAGAtaactgatgaaaaaaaatcagagttttgaaagacaaaaacaatgcctctttttgtactgtatttttacatttgtttttgttttgtttctcctTTTTTGCTCCCTGGTTGGAAGTGAATAATCACAGTGGACCAAATCTCATGAGTGtataacaataaacagactGTTTTAGCAAA

Function

NR:

description
PREDICTED: zinc finger CCCH domain-containing protein 7B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669437.1 True 6182 mRNA 0.44 20 17213596 17232139

Neighbor

gene id symbol gene type direction distance location
LOC103028774 NA coding downstream 813 17204332 ~ 17212783 (-)
LOC103029821 aco2,LOC108273913,LOC107692062,LOC107554054,LOC107731401 coding downstream 14759 17187667 ~ 17198837 (-)
LOC103043322 NA coding downstream 43718 17148541 ~ 17169878 (-)
trnal-uag_1 NA coding downstream 118270 17095245 ~ 17095326 (-)
LOC103032763 snu13,nh2l1,snu13b,LOC105898651,LOC105031476,LOC105910236 coding downstream 145614 17065403 ~ 17067982 (-)
LOC103027309 NA coding upstream 41234 17273373 ~ 17288832 (-)
LOC103025298 LOC103025298,LOC108273827,LOC108431982,LOC107690061,LOC107584211 coding upstream 87067 17319206 ~ 17325915 (-)
rsl1d1 NA coding upstream 182936 17415075 ~ 17421795 (-)
LOC111192420 NA coding upstream 198867 17431006 ~ 17438492 (-)
LOC111192380 NA coding upstream 210502 17442641 ~ 17466671 (-)
G37217 NA non-coding downstream 91395 17121775 ~ 17122201 (-)
G37215 NA non-coding downstream 97588 17112502 ~ 17116008 (-)
G37213 NA non-coding downstream 102887 17108712 ~ 17110709 (-)
G37206 NA non-coding downstream 121545 17091742 ~ 17092051 (-)
G37191 sun1 non-coding downstream 172655 17036556 ~ 17040941 (-)
G37237 tnrc6b non-coding upstream 9037 17241176 ~ 17327596 (-)
G37238 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC108431950 non-coding upstream 9581 17241720 ~ 17247453 (-)
G37254 tnrc6b,LOC107690060 non-coding upstream 103452 17335591 ~ 17337322 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding upstream 153702 17385841 ~ 17390421 (-)
G37298 tmem101,LOC107720276 non-coding upstream 256746 17488885 ~ 17494415 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other downstream 29169 17179347 ~ 17184427 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other downstream 150649 17047607 ~ 17062947 (-)
G37183 NA other downstream 194678 17016128 ~ 17018918 (-)
LOC103043629 LOC108412394 other downstream 298311 16913570 ~ 16915285 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other downstream 1373080 15837105 ~ 15840516 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other upstream 142045 17374184 ~ 17381733 (-)
G37290 NA other upstream 200833 17432972 ~ 17466024 (-)
LOC103025140 NA other upstream 241771 17473910 ~ 17476878 (-)
LOC103025753 LOC108425979,LOC108274047 other upstream 302564 17534703 ~ 17689384 (-)
cntd1 NA other upstream 460358 17692497 ~ 17705023 (-)

Expression


Co-expression Network