LOC111188179


Basic Information

Item Value
gene id LOC111188179
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17423685 ~ 17424194 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669438.1
AACAGGTCATGTTTCCCTCAGAACTCTACCACCAGCACTGAGGCCACTCGCCCTGATCCTTTCCCAACATTAAAGTCTTTTGGAAGATCTTGGAGTGTTTTGTAATATTTCAAAGtggacaaaagaaaaaaatatatcctGCACTGAGGAAAGATCATCATGGAGAATCGAGTTCAGGGAGTTGGCCGGTGTAAGTTTGCCTTTTGGTTCGCTGTGTTCCATGATATTCTTGGCCTCCTCATCCTCttgtctggtgtgttttggaacaTCTTCTTCCATGATTTTTTGGTCTATGCTGGATCTTTGATCATCTTCCTGAGCCTGATCTGGTGGGTGTTCTGGTACAGTGGTAACATTGAGGTTCCTCCTGCAGAACTGGAGGATGACATTGCGCAGTATAAAAAGAGCAAAGGGATCTCTGGAGTTGTGCGCAAAGTTTCTAATCGTATTTCAAACGGACTGAGGAATTCCTTCAGGAAGAGCGGGAGGTCCGGCAGGCAGGTGTGGAAC

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko05204 Chemical carcinogenesis - DNA adducts

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669438.1 True 510 mRNA 0.45 1 17423685 17424194

Neighbor

gene id symbol gene type direction distance location
LOC103022777 gspt1,LOC107692072,LOC107690055,LOC107734224,LOC107554042 coding upstream 13751 17397153 ~ 17409934 (+)
dmc1 dmc1 coding upstream 27628 17391730 ~ 17396057 (+)
tomm22 tomm22,LOC107554024,LOC107584213,LOC107692102 coding upstream 33260 17385894 ~ 17390425 (+)
tmem184b tmem184ba,tmem184b,LOC107690057,LOC107584104,LOC107692069,LOC107731404,LOC107554044 coding upstream 49563 17358723 ~ 17374122 (+)
LOC103024972 csnk1e,LOC103024972,LOC108431980,LOC107584103,LOC108273445,LOC107690058,LOC107731422 coding upstream 65092 17343937 ~ 17358593 (+)
tmem101 tmem101,LOC107708986,LOC107693682 coding downstream 59725 17483919 ~ 17491064 (+)
g6pc3 NA coding downstream 97303 17521497 ~ 17534277 (+)
pagr1 pagr1,LOC107708911 coding downstream 372640 17796834 ~ 17802617 (+)
cabp5 cabp5a,LOC108425940,LOC107708978,LOC107562016,LOC107693687,LOC105909107 coding downstream 454401 17878595 ~ 17888249 (+)
nif3l1 nif3l1 coding downstream 472596 17896790 ~ 17903709 (+)
G37001 NA non-coding upstream 199278 17224041 ~ 17224407 (+)
G37000 NA non-coding upstream 199985 17223335 ~ 17223700 (+)
G36998 NA non-coding upstream 200810 17222400 ~ 17222875 (+)
G36983 NA non-coding upstream 251060 17172425 ~ 17172625 (+)
G36982 NA non-coding upstream 253829 17169351 ~ 17169856 (+)
G37055 NA non-coding downstream 43763 17467957 ~ 17468321 (+)
G37056 NA non-coding downstream 44286 17468480 ~ 17468772 (+)
G37058 NA non-coding downstream 46130 17470324 ~ 17470774 (+)
G37060 NA non-coding downstream 51224 17475418 ~ 17475771 (+)
G37066 NA non-coding downstream 85223 17509417 ~ 17509619 (+)
tnrc6b tnrc6b other upstream 82793 17297479 ~ 17340892 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other upstream 141454 17250981 ~ 17282231 (+)
cby1 cby1 other upstream 189126 17232820 ~ 17234559 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other upstream 218652 17201497 ~ 17205033 (+)
sun1 NA other upstream 382728 17000382 ~ 17040957 (+)
LOC103045739 LOC103045739 other downstream 281485 17705679 ~ 17708597 (+)
G37098 NA other downstream 290935 17715129 ~ 17715992 (+)
G37099 NA other downstream 294037 17718231 ~ 17719376 (+)
G37131 taok2,LOC108425925,LOC108273910 other downstream 433723 17857917 ~ 17863066 (+)
G37152 LOC108425993 other downstream 528386 17952580 ~ 17960304 (+)

Expression


Co-expression Network