LOC103023915



Basic Information


Item Value
gene id LOC103023915
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17972588 ~ 17986489 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_022669442.1
GCTGTCTGCTTTGAAACCTGACCGCCCTCCTTCCTCCTCAGAGCTTCTCAGCAGCTTCAGGAACTGCAGAAACTCACACTTCACCACTCACAGTCCTGCAGCTCCAGATAACTCTCTTTATCCAGCCGTTTCCTCTGGATTATAGAGAAGGAGCCGCTTCTGAGGAGCTGAGGAGAGCTTCAGTCAGATCCTCCTGAACTTCTTCAGCCATGGAGGGATCTGAGAGCTCCATAAACCGGATTGGTCGCACTATTTGGACAGTCTGGGGTTATCTCTCAGGGGCTGTGGGAAGATACCTCAAACCAGAGGTCTCAAACGAAGAAGACAAGCAAAATGGAGAAGACACCGCGGCCGACGTGACCATCAGCAAGAGTTACAGAGAGCtgaaagaagatgaagaagagacAGAAAGGAGTGAGACAAACACCTGGGCCCAAAGTGAGAGCCCCCAGAGTGGCGTCCGGGTGCGGCTTGCAGCCGTTCAGTGGGAAAAGGCGAGCATACGCAAGGGAggcacaaaaagaaaaaactggCACTGGGGTTGCGTGGAACACTGGGGTTCAGGAGGGTTGTCCTTGGACAAGAAGGTAATCAAACATGCCAAGGACAAGGATGAAAATGAGGTGAAAGAagatgagcaagagacaaatCAGAGTATAACTGAGGATGAAACTGAGGCGTATACATCAGGAATGGCCGATGACTTGTTATCCCACTTGACCCACTCAACAAAGCAAATGGAAGACCTTTTTGGTTCTCCTTCAAATGAAGAACTCAAAATGGATGGAGAACATAGCGAGACAACAGAAACAAATGAAATCCAGTCTGAGAGAGAAGTAATTGAGGCCAGCGTTGAGGAAACAAAGCAAAGGACTGAAGGATTCATTAAAGATGAGCAAGAAGAATCCAAGCATGACGTTGTTGACTATAAATCAAATCTGGAAGAAGCCAAAGCGACTGCATTTGAACTGCTGGAGGAACCCAGGACAGCACAGGAAGAacatagagaaaaagaaataattgaACACGAATCAGAACCCGTAAACATGGCCGTGCTGACACCAGGAAAAGAAGATTCCAACCATGAAACAATGGAAGAGATTGTGGGAACAATAACGGATGGAAATATTCAAGCAGCTCAGCAGgtaatttctgagacactgaataTCTGTGAGTCAAAGCAAGATGAAGCACAATTCGGATTCACAGAGGAAATAGTGAAAATAAGGAAAGAACcagtttcagaatcagtttgCCCAGTTACTGAATATGAGGAAATCTTGACACCAGAAACAGAATTGGCCGAGGCCATCGAGGAGTCAAAGCTAGTGACTGTGGGGTCTGTAAAGGAGGGGCAGCCTGAAGCAGATCTGGAATCAAGTGAATTCAAAAGTCCTGAAATTGTCTACAAACCAAATTTTCATGAGTCAGAGCTGGATGAATCCCAAACTGTATTTACAGAGGAAATGATCAAGCCTGAATGTGAAGCTTTGGAGGAATCTTTAACAGGACAGAAGGAGAACACAGAAATCCATGGAAATGAGCCAGAATCTTTTAGAAAAGGTACTGAAAATGATCCAGCAAGTGTCACTGAAGAATCAAAACAGTTGACTTTAGCAACCACTGAAGATGAGcaacaagaagctaaacaatTTAGTGAATCTGAATTTGCTGAAGCAGTTGAGCTGTGTGAATCAAAACTGGATGAATCGCTCATTCAACTTActgaagaaagagaggagacTGAGTGTGATATTGTGGAGGAACCTGTGATGGGGCATATAGAAGTTGCAGAAAGGGAATCAAACCAAGTTCTTGATGAATCAGAGCAGCATAAAGCAGGTTTTGAATCAAGTGAATTCATAGTTTCTGAAATTGCTGCCAAACCAGACATTCACAAGTCAAAGTTGGATGAAAACCAAATTGTATTcccagtggaaatggaggaaaCTGAATGTGAACCACTGGAGGAATCTGCAACAGGACAGATGGAGAACGCAGAAATCTATGGAAATAAGCCAGAATCTTTTAGTAAAGGTACTGAAAATGATCCAGCCAGTGTCACTGAAGAATCAAAACAGTTGACTTTAGCAACCACTGAAGATGAGcaacaagaagctaaacaatTTAGTGAATCTGAATTTGCTGAAGCAGTTGAGCTGTGTGAATCAAAACTGGATGAATCGCCCATTCAACTTActgaagaaagagaggagacTGAGTGTGATATTTTGGAGGAACCTGTGATGGGGCATATAGAAGTTGCAGAAAGGGAATCAAACCAAGTTCTTGATGAATCAGAGCAGCATAAAGCAGGTTTTGAATCAAGTGAATTCATAGTTTCTGAAATTGCTGCCAAACCAGACATTCACAAGTCAAAGTTGGATGAAAACCAAATTGTATTcccagtggaaatggaggaaaCTGAATGTGAACCACTGGAGGAACTTACAACAGGACAGATGGAGAATGCAGAAATCTATGGAAATAAGCCAGAATCTTTTAGTAAAGGTACTGAAAATGATCCAGCCAGTGTCACTGAAGAATCAAAACAGTTGACTTTAGCAACCACTGAAGATGAGcaacaagaagctaaacaatTTAGTGAATCTGAATTTGCTGAAGCAGTTGAGCTGTGTGAATCAAAACTGGATGAATCGCCCATTCAACTTActgaagaaagagaggagacTGAGTGTGATATTGTGGAGGAACCTGTGATGGGGCATATAGAAGTTGCAGAAAGGGAATCAAACCAAGTTCTTGAGGAATCAGTGCAGCATAAAGCAGGTTTTGAATCAAGTGAATTCAAAAGTCCTGAAATTGTCTACAAACCAAATTTTCATGAGTCAGAGCTGGATGAATCCCAAACTGTATTTACAGAGGAAATGATCAAGCCTGAATGTGAAGCTTTGGAGGAATCTTTAACAGGACAGAAGGAGAACACAGAAATCCATGGAAATGAGCCAGAATCTTTTAGAAAAGGTACTGAAAATGATCCAGCCAGTGTCACTGAAGAATCAAAACAGTTGACTTTAGCAACCACTGAAGATGAGcaacaagaagctaaacaatTTAGTGAATCTGAATTTGCTGAAGCAGTTGAGCTGTGTGAATCAAAACTGGATGAATCGCCCATTCAACTTACTGAAGAAGAGAGGAGACTGAGTGTTCTGAAATTGCAGACAAATCAGACATCCACAAGGCGAAAGCTTGATGATAACCTAACTGAATTCTCAGAGGAAATagcagagactgaggaaagAGTGATGAGTGAAAAGTGTGATCTTTTAGTGGAACATGTAACTGGACACGTGGAAGTTGCAGAAGTTCATGGAAAAGACCTAGAACCTTCAAGAAAAGATACTGAAACTGTAGCAGATCTACTGCCAGACAGTGAATCCATCACTCTCTTCCTTTTGGAACCAACACAAGAGATTGTGGTTACAGGGAAAagtgagcagagggaagcagatcAGCAGCAGCTGGTGAGTGAGGTCATTGGCTCTGAAATTACTGAAAATCTGGACATTTATGGGGCAAAGCTCGACGAAACCCAAAGTGAATTCACAGCAGGAATAGTTGAGACTGAATGTGAATTCTCCAGTAAGATGACCTTTAATGACGAGTCTGTGGACCGTGAGACTGTGGAGGCCATAGTGGAGGAAGCAGATCAGTTAAACCAACCAGACGAGAATTCAGAAGCAGGAACCACATTGCATGTAGCGCTCAGAACAGAAGAAGAGACATTAGGTGACACAGTTTATGCTATATATGGATCACAAACACCAGAAATGGTGATTAAGCAAGACAGTGAGTCAGTCATCGTGCTAGTAACGGAAGAGCCTGGAAACCAAAGCGAGACCACAGAATTTCAACAGGAGGTCAGAGCAGAAGTTGCAGCAGATGTTATGAAGAAATCAGCAGTGATGGAGCGTGTACACGAGCAGCCAAAATGTAATGAACATTTAGCTCTGCAGGAAACTATGGCCTATGGACTATCTGTCCTTGGAAATGAATCTTTGCAAGAGTTCTCAGATAGTAAACACATAATTGAGTTACAGTTACCTGAAGAACAGATCAGTATcatgcaaataaaaacaaaagagatGGAGTCTGGTTTTGCTGAGCAAGCAGAAGAAACTGCTGTTGAATCTGTTGATAAAATGCCAAGCTCTTCGCCACAGGAACTGGACAAATGTGAGAACGTTTCTGTGGGTATTGAGTTGCTTACAGGACTGACTACGGAAACAAAAGACAGTTTTACTGCACAGAAAGTGGAAGTGCTTGAAGTGAACACTGAATTAACAGCTGTGAGAGACCGTGTCATAACCGAAGCAAAGTGTGAGAAAGCTGCATTTGAAATGGATGCTTCAGAAACAGAAAGTGAGTCTACTCTTGCAGCTGTAGAGGCCCCAGAGACGTTTGGAAAATCAGAGGCTTCTGTTTCAGATGAAACGTTTGGAAGCCAGAGTCTGTTCAAGCAGGACGAGTGGACTGTGCAAGACAGATCAGCTGTTGAACCACATGGACAGCAGATGGAATACTCGGGGGAGTTGGGTCTGCCAGAGAGTGAATCAGCACTGGAAACATCTGCAGAGATGCAGAGGGATTTAGAAAAAGGCGGCGGTGAAGATGCAAAAAGCCCTGATGAGACCGATGGTGGATTCCCTTATGAAAAGCAGGTCATGATGGCTTCATTAGGGGTCGTAAATGAAGTAATGAGAGGACTGAAACAAAAATGTGAAGAAAGTCAGAGTTTATCTTCAAGGGAAATGGACACACATGAAAAAGGGGTGACCGAAACATTGAAAGAAAGGGTGGAAACATCAGACCCTAATCTGAATCTCCTGCATACAGTGGAAATCAGACAGAATTTACCAGTAGAAGCAATGGACATTGGCagcgaaagagaaagaaaagaagaagtcTCTCAGCATACCACAGGTGATGACGTAGAGCTTCTTGCAGAGGGAAAAGAGGATATTGgttttaaagaagaaaaggCCGATGGTGAAGAGAAATTACTAGTTGACAGTAATGGAAACATGCAAGAAAGAAGCAGACCTGGCCTGAAGAGAGGGTTTGAAAAAATGGCAAGAAATGAAGAGAGTAAACCAACAGTTCCTAAGGACTGGGCCGGAACCAGCCTTGTACTCCAGCAGGTCTCCTCATTGGACTGCACGGTCCAGAAGTCAAAAATTGCAGTGAAAAACCCTCATGTTCGACCACCCAAAGACCCTCGTACGCTCATAAACAAGGCTTCAGTGGAGCCCTTGGCACCGACCCGCCCCTCACAGCCCAGTCCTCTGAGAAAGGCTCAGGGAGAAGGGCTCATAATACCACAGAAAGGAGTCCAAGGAATTGGATTCAAACTACCTGGTCTGGGTGCAGGATTCCCTGCTTTGAGAAAAACTGATGCTGGTAGGAAAATCAGGGacgagggagagacagagagttcATCAACAGAGTCTCTTCCCCTTCAGAAATCTGATCCCCCGACTGAGACAAAAGAAGAAAGTGTCAAGCCAGAGCAGCCGGCTAACAAACCCAAATGGACGCCCCCGAGACATCCTGGGATGGGAAACCCAATGATGATGTCAGAACTGAAAAGCAAACTCAAAAAGACTGGAAAAGAGTGAAGAGCTTCACCAGAGAAGAACATCACAATTTAACCAGCCCCTTTTTACTGATTCTGTTCACTTTCTTTGCTATTTCTTCCACAGTGCAATGAAAACTAGTCTTTTCTTCCCCTGCagtgcaatataaaaaaatcatataattttttgactgtgcaatgtaaaaaatgagatttatagtaaagaaaaaaatat

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_022669442.1 True 5834 mRNA 0.43 8 17972588 17986489

Neighbor


gene id symbol gene type direction distance location
ppp4c ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 coding downstream 1568 17961930 ~ 17971020 (-)
LOC103023166 LOC108425993 coding downstream 12297 17941850 ~ 17960291 (-)
prodh2 prodh2,zgc:92040 coding downstream 33503 17929307 ~ 17939085 (-)
LOC103022355 NA coding downstream 53791 17904204 ~ 17918797 (-)
taok2 taok2b,LOC107693686,LOC108273910,LOC107562015,LOC107708977,LOC107571768 coding downstream 100434 17839427 ~ 17872154 (-)
LOC103046263 NA coding upstream 5578 17992067 ~ 18015094 (-)
aldoa aldoa,aldoab,LOC101465268,LOC107720037 coding upstream 56553 18043042 ~ 18056729 (-)
LOC103046869 NA coding upstream 114077 18100566 ~ 18117853 (-)
LOC103029702 LOC108441164,LOC108413442 coding upstream 136532 18123021 ~ 18126382 (-)
LOC111192381 NA coding upstream 156328 18142817 ~ 18160060 (-)
G37333 LOC103045739 non-coding downstream 263983 17705734 ~ 17708605 (-)
G37309 NA non-coding downstream 416666 17553572 ~ 17555922 (-)
G37298 tmem101,LOC107720276 non-coding downstream 478173 17488885 ~ 17494415 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding downstream 582167 17385841 ~ 17390421 (-)
G37254 tnrc6b,LOC107690060 non-coding downstream 635266 17335591 ~ 17337322 (-)
G37443 NA non-coding upstream 140045 18126534 ~ 18126807 (-)
G37444 NA non-coding upstream 140765 18127254 ~ 18127560 (-)
G37449 NA non-coding upstream 151460 18137949 ~ 18139122 (-)
G37450 NA non-coding upstream 154303 18140792 ~ 18141076 (-)
G37451 NA non-coding upstream 155518 18142007 ~ 18142377 (-)
vps25 vps25 other downstream 176600 17789951 ~ 17795988 (-)
cntd1 NA other downstream 267565 17692497 ~ 17705023 (-)
LOC103025753 LOC108425979,LOC108274047 other downstream 283204 17534703 ~ 17689384 (-)
LOC103025140 NA other downstream 495710 17473910 ~ 17476878 (-)
G37290 NA other downstream 506564 17432972 ~ 17466024 (-)
LOC103047479 LOC108441156 other upstream 296001 18282490 ~ 18317957 (-)
G37603 NA other upstream 586202 18572691 ~ 18573176 (-)
G37616 NA other upstream 647089 18633578 ~ 18635098 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other upstream 1557736 19544225 ~ 19601284 (-)
c4h10orf128 NA other upstream 1831779 19818268 ~ 19825652 (-)

Expression



Co-expression Network