LOC103021514


Basic Information

Item Value
gene id LOC103021514
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18518908 ~ 18529955 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669443.1
ATGACTGAATGTCAGATCCTGATGCAGGCAAGTTCAGCTCAACCTCCTGCTGAAGTAAACCAAATTACAGACTGTCTGGTGGAGTGGGATGGTGTTAACTGTTGGCCTGCTGCTCAAGCTGGAGAGATGATGTCAGTGCCCTGTCCACCTCCTCTACAGAAACTCCTCATTATCACTCGTAACTGCACCAGAGACGGCTGGAGCAGCCTGAGCATCCCCTATTACACCGCCTGTCTTCATCTGGACCCCAGTGAGGAACAAGCCACAGACCAGAAGCGAGAATACTTCTCCACTGTGAAGCTGATCTACACTATCGGTTATGGCGTGTCTCTCGGCTCCCTCTGCATCGCCATGCTCATCTTTACTATCTTCAGGAAGCTGCTGTGCACACGCACCTGCATCCACCTCaacctcttctcctccttcatTCTGAGAGCCGTGGCCGTGTTCGTGAAAGACGCTGTGCTGTTCTCTGACGAGACTATCGATCACTGCACCATCTCTACGGTTCTGTGTAAAGCTGCAGTGACGTTCTTCCAGTATTGTGTGCTGGCAAACTTCTACTGGCTGCTGGTGGAGGGGCTGTACCTGCAGACCCTTCTAATCTTCACTTTCACCCACAAGAGGGCTTTTGTCTGGTGGtatgctctgattggctgggGGATGCCAACTGTGACGATAATCACCTGGACACTCTTAAAGCATCAGTTTGACAACCGGGGgtgctgGGATGACTTAGACAGTGGCCTTTGGTGGATAATCAAAACCCCCATCCTGTGCTCAGTTTTTGTCAACTTCATTATATTTGTGAACATCAGTCGGATCATCGTGTTGAAAATAAAGACCCCTGACTGTAACACAGGAGAGAGACCACTTTACAGGCGGCTGGTGAAGCCCACTCTGCTGCTGATTCCTCTGTTTGGAGTTCATTACGTCGTGTTCGCTGTGTTCCCGGAGCATGTGGGTCTGGAGCCCAGGCTCTTCTTTGAACTGGTGCTGGGATCCTTCCAGGGCTTTACTGTTGCACTGCTGTACTGCTTTTTGAACAGCGAGGTCCAGACAGAACTGAAGAAAGGGGTTGCCAGATGTTGGTCCCAGAGGGAGAACAACGTGATTAACATGGCTACACAAGATTTTATGGCTTAGATTGTGgcaaaaaagcatttaaaaga

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669443.1 True 1172 mRNA 0.50 12 18518908 18529955

Neighbor

gene id symbol gene type direction distance location
LOC103034039 LOC108441161 coding upstream 69705 18420193 ~ 18449203 (+)
LOC103032559 LOC108441169 coding upstream 175447 18332474 ~ 18343461 (+)
LOC103030877 NA coding upstream 304704 18200351 ~ 18214204 (+)
LOC103047175 LOC108441166,LOC108273636,LOC107557340 coding upstream 332925 18171354 ~ 18185983 (+)
mapk7 NA coding upstream 380030 18128440 ~ 18138878 (+)
LOC103021833 scn4a,scn4aa,LOC108435052,LOC107732174,LOC107654028,LOC107598592,LOC107664628,LOC107708946 coding downstream 3579 18533534 ~ 18583781 (+)
cd79b NA coding downstream 61950 18591905 ~ 18598830 (+)
plekhm1 plekhm1 coding downstream 85293 18615248 ~ 18640148 (+)
LOC103035226 rab5c,LOC103035226,LOC108431395,LOC108274320 coding downstream 179030 18708985 ~ 18716376 (+)
LOC103023065 LOC108431394,LOC107590592 coding downstream 195937 18725892 ~ 18806982 (+)
G37557 NA non-coding upstream 46335 18470159 ~ 18472573 (+)
G37534 NA non-coding upstream 132256 18386414 ~ 18386652 (+)
G37501 LOC108441156 non-coding upstream 200956 18313306 ~ 18317952 (+)
G37492 LOC108441156,LOC108274106 non-coding upstream 229522 18286903 ~ 18289386 (+)
LOC111192384 NA non-coding upstream 265136 18232596 ~ 18253772 (+)
G37592 NA non-coding downstream 59267 18589222 ~ 18641095 (+)
G37652 NA non-coding downstream 282784 18812739 ~ 18812951 (+)
LOC111192409 NA non-coding downstream 433282 18963237 ~ 18964036 (+)
G37735 NA non-coding downstream 684613 19214568 ~ 19214818 (+)
G37751 NA non-coding downstream 812144 19342099 ~ 19342794 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other upstream 142563 18371378 ~ 18376345 (+)
G37404 NA other upstream 404982 18107564 ~ 18113926 (+)
LOC103046566 NA other upstream 418929 18063983 ~ 18099979 (+)
G37155 ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 other upstream 547909 17961940 ~ 17970999 (+)
G37152 LOC108425993 other upstream 558604 17952580 ~ 17960304 (+)
LOC103022762 NA other downstream 115680 18645635 ~ 18707728 (+)
G37749 NA other downstream 799413 19329368 ~ 19331661 (+)
G37812 mms19,LOC106578995 other downstream 951101 19481056 ~ 19484915 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other downstream 958944 19488899 ~ 19511441 (+)
G37943 NA other downstream 1625773 20155728 ~ 20158339 (+)

Expression


Co-expression Network