LOC111192421


Basic Information

Item Value
gene id LOC111192421
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19851884 ~ 19858626 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669444.1
ATGACACCTCACTGCGCTCCTCTCCTCACCATCTTCACCTTGAGGATTCTCCACACCTCGTTCCAGACTGTTTCAGGAGaagcagacacacacatgccTCCTGAGCCAGAAGTCTTTAAGCAGCTCAGCTGGAAGAATCTTCATCATCTGCAGAAGCTGCAGAGCAGTGAGCTGCATAGTAAAGTGCCTCAGTTCATGATGGATCTCTACGCCGCCGCGGCCGGATCAGGCAGCATTGTACGGGAGCCGGACGGGCCGGACGGGAACGTGGTGAGGAGTTACGCAGGACATTCAAACGGGGCATTTCACTATTTTAACCTCACATCGTTTAGCCAAGGGGAAAAGGTCATCAGAGCAGAGCTACGGTGGTTTCGTCATGCACAGCCATTTTTTATGGGGCATCATTTTTATAAAGTGGATCTGTACGAGGTGCTGGATGGCAGAGTAAAACCGTGGAGAGGAAACCTCATAACATCAAGACTGTTGCCCATGAACACCACCGGCTGGGAGGTGTTCAACATCACTAACACGGCAACCAAATGGATTCTCAACAGCGGCACAAATAACGGCCTTCTGCTCGTCTCAACTTTACCGTCGGGTCAGTGGTTTGAGGCTAGTGTGCAAACAGGAGGAGAGACAAAGCCAGAAGAAAATGATGCTTATTTGGTTATCTACTCAGATGATGGTCGCAGAGGCTCAGGTATGGGTCAGAGCAGCTCATCACCTCTGGACTTGGTCCTGGAGTCCATGATTACCCACTGGACCGCGGGGCGTATACGTAGGAGCACCCACCAACCTCCACCAGACCACAAGCCGTTCACAACATGTCAGAGAGCCCCGCTGTACGTGGACTTTGCTAAGATCGGCTGGTCCGGGTGGATAATATCACCCAGAGGCTACAACGCCTACCAGTGTGTGGGGTCCTGCCCGTTCCCTCTGGGTGGGAGTTTAAGAGCGACAAACCACGCCATCGTTCAGTCTATAGTGGACGCTCTGAAACTCTCCAGCAAGGTGGAGCAGCCATGCTGTGTGCCGGATGTGCTGCACCCGATAAGCCTGCTGTACTTCGATGATGAGGAGAATGTTGTACTTAAACAGTATGATGACATGGTGGCTGGTAGCTGCAGCTGCCACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669444.1 True 1137 mRNA 0.52 6 19851884 19858626

Neighbor

gene id symbol gene type direction distance location
LOC103041897 vstm4,LOC108437315,LOC107720466,LOC107708899,LOC107653934 coding downstream 35703 19802002 ~ 19816181 (-)
LOC103041296 LOC108437306,LOC108274024 coding downstream 71389 19741133 ~ 19780495 (-)
frmpd2 LOC108437313 coding downstream 143275 19678449 ~ 19708609 (-)
LOC103045380 NA coding downstream 219556 19627600 ~ 19632328 (-)
LOC103040263 NA coding downstream 228507 19616411 ~ 19623377 (-)
LOC103037418 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding upstream 876677 20735303 ~ 20781329 (-)
cops3 cops3 coding upstream 925303 20783929 ~ 20797947 (-)
rasd1 rasd1,LOC108412952,LOC107653935,LOC107720458,LOC107602420 coding upstream 1008174 20866800 ~ 20869080 (-)
pemt pemt,LOC107719881 coding upstream 1017808 20876434 ~ 20968546 (-)
lmf1 lmf1,LOC107580192 coding upstream 1122779 20981405 ~ 20990118 (-)
G37929 NA non-coding downstream 81 19851544 ~ 19851803 (-)
G37928 NA non-coding downstream 412 19851247 ~ 19851472 (-)
G37927 NA non-coding downstream 2564 19848873 ~ 19849320 (-)
G37920 NA non-coding downstream 50637 19800948 ~ 19801247 (-)
G37921 NA non-coding downstream 51071 19800560 ~ 19800813 (-)
G37934 NA non-coding upstream 117882 19976508 ~ 19976726 (-)
G37936 NA non-coding upstream 155520 20014146 ~ 20014354 (-)
G37939 NA non-coding upstream 183393 20042019 ~ 20042337 (-)
G37941 NA non-coding upstream 189818 20048444 ~ 20048668 (-)
G37953 NA non-coding upstream 332782 20191408 ~ 20191686 (-)
c4h10orf128 NA other downstream 26232 19818268 ~ 19825652 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 250600 19544225 ~ 19601284 (-)
G37616 NA other downstream 1216786 18633578 ~ 18635098 (-)
G37603 NA other downstream 1278708 18572691 ~ 18573176 (-)
LOC103047479 LOC108441156 other downstream 1533927 18282490 ~ 18317957 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other upstream 653045 20511671 ~ 20679431 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 2014694 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 2154879 22013505 ~ 22038504 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 3522019 23380645 ~ 23387442 (-)
LOC111192393 NA other upstream 3606593 23465219 ~ 23510619 (-)

Expression


Co-expression Network