LOC111192422


Basic Information

Item Value
gene id LOC111192422
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 22070247 ~ 22097898 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669448.1
CTCCAGTCTACCGGAGGgatgagcagcagcagcagcagcagcagcagcagcagcgtccTCTAGCtgcatctctctgtctgtccctctatTTATCTCTCCGCCTGTGGACTCCGTGGTGTCAGTTACCGTCCAGAGATCAGCATCCTCGCCTCCTCTTCGTCAGCGGGAGAGCACGGGTCCAAAGTTCTCCCCTACAGGAAAGATGGAGGAAGACCTGGCCAGGCTTCTCCTGCTGAAGGAGGAGAGGATCCGGGAGATGGAGTTAAGGCTCGccgagaaggaggaggagatcGCCGAGCTGAAGAGGAAGCTGCACAAGTGCCAGTCCGTGCTGCCCAGCGCCCCACTGATGGGACCCAGGACCAGGCGGGCTCAGGGCATCTCCGCCGAGCCCCAGCCCTTCACCTCCTTCCAGCAGCTGACCAGCGAGGCGCTGCGCAAACACGCCAAGTCTGACAGCGGGGCGAAGTGCCTCGGCATGCGGGATCCAGCGGCAGCGCTCAGCGGGAACCTCTCCTCTCCGCCCGCGATGTGTGAGCAGCTGTGGAGCTCCCGGGGCCGATTCTGCTCTCTGCGTGTTCCCGCTCTCCTCCCCCAGGCGTGTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669448.1 True 607 mRNA 0.63 2 22070247 22097898

Neighbor

gene id symbol gene type direction distance location
LOC103021762 asah2,LOC107598643 coding upstream 58442 21987804 ~ 22011805 (+)
LOC103023313 NA coding upstream 85963 21959447 ~ 21984284 (+)
sgms1 sgms1 coding upstream 119570 21938629 ~ 21950677 (+)
g6pc g6pc,g6pca.2,LOC106579337 coding upstream 192034 21873312 ~ 21878213 (+)
ptges3l ptges3l,si:ch211-131k2.3,LOC107653952 coding upstream 219266 21843965 ~ 21850981 (+)
dkk1 dkk1 coding downstream 270878 22368776 ~ 22371487 (+)
LOC111192392 LOC108416223 coding downstream 900781 22998679 ~ 23000623 (+)
tfam NA coding downstream 1290082 23387980 ~ 23396378 (+)
bicc1 bicc1,LOC107653928,LOC107695510 coding downstream 1320955 23418853 ~ 23594042 (+)
phyhipl phyhipl,phyhiplb,LOC107727060,LOC107746456,LOC107654056,LOC107695536 coding downstream 1530789 23628687 ~ 23685558 (+)
G38375 NA non-coding upstream 16578 22053359 ~ 22053669 (+)
G38330 a1cf non-coding upstream 53774 22013499 ~ 22016473 (+)
G38325 NA non-coding upstream 57194 21934281 ~ 22013053 (+)
G38324 NA non-coding upstream 133174 21909061 ~ 21937073 (+)
G38314 NA non-coding upstream 187341 21881436 ~ 21882906 (+)
G38391 NA non-coding downstream 154251 22252149 ~ 22252642 (+)
G38392 NA non-coding downstream 181056 22278954 ~ 22327073 (+)
G38379 NA non-coding downstream 255611 22353509 ~ 22354614 (+)
G38438 NA non-coding downstream 312493 22410391 ~ 22410651 (+)
G38439 NA non-coding downstream 320990 22418888 ~ 22419169 (+)
plce1 plce1,LOC107743958 other upstream 773424 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 941483 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 1039450 21019169 ~ 21030797 (+)
G37943 NA other upstream 1911908 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 2558806 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 1649571 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 1649673 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 1649775 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 1649877 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 1649979 23747877 ~ 23747949 (+)

Expression


Co-expression Network