LOC111192426


Basic Information

Item Value
gene id LOC111192426
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 25421325 ~ 25433217 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669452.1
ATGCATATTCACTCCATCCCATCCACGTCCACACCATCGGAGCGCATCTTCTCTAAGGCCGGCTTCATTGTCAACCACAATGGATTCTTGACATTTGATCAGGCATCCAGCAACTATACTCCCATTCAGTTCAACAGCAGTTACAGTGGAAGAGATATCATTGCTCCATTCTGGACTGATATTGATAATAGACTAAATGGCATTATATCTTATAATCTGTACACTGTGGGAAATGTGCTCTCACGGGCCACACAGGACATCAACCAGTACTTTACAGGAGTCAGCCTCTCTGCCCTGTGGGTCTTTGTTGCTACATGGGATAAAGTGGCTTACTACAACAACTCAGGCACGGAATCATCTTTCCAGGTGGTCTTGATCTCTACTGGCAGTTCTTCCTTTGTGCTGATGAATTATGGGGTCATTGCCAAACTAAACTGGACCACAGAggcCGGGTACGCCAGCTCCACACAGAACTTTACAATTCTGTGGGAAACCAACAAAGTTGATGTAAACCTTTCAAGCTCGAGCAATGTGGGCATCCCAGGGCGCTGGGCCTTCTGGGTTAATGGAGCACCAGATAACAGCATTACAACCACTCTTAGCACAACAACCCCATTCAGTTCCACATCTGCTACCAGCAGCACTACGGCTGCCAGCACAACAACCCCGTTCAGTTCCACATCTGCTACCAGCAGCACTACAGTTCTAAGCACAACAACCTCAGTCAGTTCCACACCTGCTATTCCCAGCACAACAGttttcagcACAACAAATCCAATCAGTTCCACACCTGCTACCCCCAGCACTACAGATTCTTCCACAAGTGGTATTGTTGGGTTGAGACTGAAAGTCACCACAGGCTTAAATTTAACAGACACCAACCACCAAAAGATCTTTTTACAACAGCTCATTGATGAACTAAGCAAGAGAGGACTGCAAAATTCTGTCAGAGTGAAAGTGAAGCAAGTTCAAAAGATGAGCCCATGATTGGGTGATACATAGTACATAGGACCAAATTCTCATATTATAGTGTAAATAATATAGTGTAGTTATTCCTACAGTTTGAAATATTATAAATCAAAATCACAGATCTCCTTATATGTTTCAGGGACAGAACAGCCCCACCCATTAAAAATACTTGATACTtgataaattgtatttaaaaaagctaaacaGCAGCTACTTACACAGGTACAGGTGCTATCTGCACCCAAACCACGTGATCAGTAACATGAGTGAGGTCGGCAGAGGAGAGTTTAAACTAACAGTGAATGGTATGATCCACTTTAGGGGTGTGAAATTGTATTACAGGATTCTCTCAGGCATGGctactgtacatttattttttaccctcTTTAGGAGGGTCAGACCCTGTTTGTCTAAATGAACCTCATTATCAATGTGGGACAGTCAGTTAACAATTATTTGTGATTTTGTTTATGTGAAAAGGTTTTGTGTAGTTATAAACCCTTTCATTGTTTATGTAATTGATGTGTTGTTCTGTATCTGAACTTAATCAGGATGTGGGTATTTCTGAGTAAATGCATGACAGGCATTCCTAAAATGCTTGAGAATGGCAGAAATGCTGTTTTAGACCATGATTTAAAACCAGTTTAGTGCACTGCTGGAAATGCCACGGTTTTCATGCCTGCTAGACTCTGTGGTACAGAACTCGGACCTTTCCGTTCCCGTCTATGGACAAACTCTGATCCTGCACTACAGTTCCCAGCATGCATTCGCCAGTGTCACATGTTCAGACTCAACCAATCCCATCTCACTTCACGCTTATACCCGAAATATTTTCATCTGCTTATGTATATAAAAGCCTGTTTGTAATGCTTGTTTATTAGTAGTTTACAGAGCTTTTTTATTCTGATtgtattttctgtgtatgacctgtaTTTTCTCTTTGACTGCattttgccttgcccttctgctttatttatatttgtaattttctGGCTTGTTGAACATACGGTTACTTTATTGGTTTGTAATTTGGCTCTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669452.1 True 2009 mRNA 0.41 10 25421325 25433217

Neighbor

gene id symbol gene type direction distance location
LOC103022410 NA coding upstream 56442 25359459 ~ 25364883 (+)
LOC103022724 NA coding upstream 87396 25294253 ~ 25333929 (+)
LOC103032189 rpl19,LOC103032189,LOC107084780,LOC107567432,LOC102219718,LOC107670912,LOC107378566,LOC107754295 coding upstream 395431 25022191 ~ 25025894 (+)
LOC103031867 NA coding upstream 400668 25016336 ~ 25020657 (+)
pkmyt1 pkmyt1 coding upstream 413298 24995486 ~ 25008027 (+)
LOC103024180 tlk2,LOC108431425 coding downstream 3238 25436455 ~ 25461136 (+)
brca1 NA coding downstream 45319 25478536 ~ 25534478 (+)
G39185 NA non-coding upstream 7331 25413651 ~ 25413994 (+)
G39177 NA non-coding upstream 52010 25368779 ~ 25369315 (+)
G39123 NA non-coding upstream 203019 25218047 ~ 25218306 (+)
G39119 NA non-coding upstream 212329 25208497 ~ 25208996 (+)
G38945 patl2,tceb2,elob,LOC100708306,LOC102795145 non-coding upstream 428347 24945980 ~ 24992978 (+)
G39191 NA non-coding downstream 29549 25462766 ~ 25465369 (+)
G39204 NA non-coding downstream 108568 25541785 ~ 25545529 (+)
G39205 NA non-coding downstream 112897 25546114 ~ 25546488 (+)
G39211 rnd2,LOC108273785,LOC105030587,LOC106579157 non-coding downstream 143341 25576558 ~ 25631978 (+)
G39215 NA non-coding downstream 163351 25596568 ~ 25597951 (+)
G39179 NA other upstream 45981 25374959 ~ 25375344 (+)
G38870 NA other upstream 803873 24616784 ~ 24617452 (+)
G38817 NA other upstream 1446805 23974161 ~ 23974520 (+)
trnar-ccu_27 NA other upstream 1671132 23750121 ~ 23750193 (+)
trnar-ccu_26 NA other upstream 1671234 23750019 ~ 23750091 (+)

Expression


Co-expression Network