LOC111192340


Basic Information

Item Value
gene id LOC111192340
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 500483 ~ 504588 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649834.1
AGTTTCCTTTTTGATTGGCTCACGGGCCTATGGAACATtcatcagccaatcaaattgcaCGATAGAGTGATGTTGTGGTTGGCCGTAATTTTCACTCTCTGGTAGACGGTGGTGTATCAGTGAGATCCTGCAGCTCGGGTCTCTACAGCTCTGTCCGCGGTAAAAGAGAGTCACAGTTAGTAAAAGTTCAACAAAACACTGTGAATAAGCAGGTTTACTCACTGAGAGCTGAAAATGAAGCTTCTTTACCGTCCAGCCCGCGAAAATGTACTGTGAACTACCTGCATTGGTCGGGTTTTTGTGCAAGGGAGAGATTAGATTTTGGTCCATTGAGATCAATTGGATGGggagccaagccaagccaagctcGGACCATTGAACCAGGACACTTTTCTGCATGCAGCAAACTGAACAAGTGGATCCCGGGACTCGTTCACCTCAGACACTGAGAAAATTCACTTCAAAATGCGATGAAACCTCCCCAACCGGACCCCCGGCTGATCCGACCATGTGCTTCAGAGGAAGCGGAGCCATGGTCATGAATGGAAAACCTGCAGAGTAGAGAGAGTGTCAGACACTCCTCCTGCAGATGTGCTAAGCCAGACTACATTCACTCCATCAGTCTGTTCAAACTTGGACACCAAATCCAATCTCTGGGCTGTAAGGGCCTGCGAGGACAGCCACTAACAATCAGCATGCAGACATGGCTAGCAAGCAGATCTAAGTTTACTCCATGCACCCATGTtccatgcatttatttttttagtttgtgtttatttattctgttgCACAAGAGTAATTGAGACCTGTTGTGCATCAAAAAAAACTTGATCCAGTCAATTGAAAAATGTAACAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649834.1 True 857 lncRNA 0.46 3 500483 504588

Neighbor

gene id symbol gene type direction distance location
LOC103045384 si:dkey-100n10.2,LOC108424892,LOC107758432,LOC107584158,LOC107661094,LOC108273498,LOC107727700 coding upstream 17252 457171 ~ 483231 (+)
htr7 htr7,LOC107758424,LOC107669182,LOC107594208,LOC107584235,LOC107753458,LOC107683721 coding upstream 452920 42719 ~ 47563 (+)
acbd4 LOC107662569 coding downstream 231240 735828 ~ 745143 (+)
LOC103047415 LOC103469343 coding downstream 248000 752588 ~ 754996 (+)
LOC103022594 LOC108424886 coding downstream 333717 838305 ~ 850262 (+)
trnac-gca_9 NA coding downstream 376779 881367 ~ 881438 (+)
LOC103026642 LOC108424836 coding downstream 466048 970636 ~ 973482 (+)
G33256 NA non-coding upstream 15179 485093 ~ 485304 (+)
G33246 NA non-coding upstream 99171 396111 ~ 401312 (+)
G33235 NA non-coding upstream 127707 369665 ~ 372776 (+)
G33231 NA non-coding upstream 138023 361427 ~ 362460 (+)
G33206 NA non-coding upstream 176430 288032 ~ 324053 (+)
LOC103046496 NA non-coding downstream 54973 559561 ~ 576144 (+)
G33320 NA non-coding downstream 62348 566936 ~ 568894 (+)
G33329 NA non-coding downstream 101456 606044 ~ 612111 (+)
G33413 lasp1,LOC108424884,LOC108274031,LOC105905439,LOC108258608,LOC107567378,LOC107745925 non-coding downstream 354060 858648 ~ 944469 (+)
G33426 NA non-coding downstream 407800 912388 ~ 921558 (+)
LOC111192417 NA other upstream 76012 419010 ~ 424471 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 268566 181069 ~ 231917 (+)
LOC103039306 pcgf5,LOC108410714,LOC106589380 other upstream 334093 128356 ~ 166390 (+)
rpp30 rpp30 other upstream 399432 96303 ~ 101051 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other downstream 478579 983167 ~ 985381 (+)
trnal-aag NA other downstream 487724 992312 ~ 992518 (+)
LOC111192342 dnah9 other downstream 864585 1369173 ~ 1388019 (+)
amz2 amz2 other downstream 1546154 2050742 ~ 2056963 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 3059442 3564030 ~ 3659132 (+)

Expression


Co-expression Network