LOC111192345


Basic Information

Item Value
gene id LOC111192345
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1720811 ~ 1727257 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649840.1
TcttcttttgtgtgcattagaggcagaaaacagcatttttctcttttccatCACTGCAATATAACTGGTATGAAAGTGTTATTAAACACTGTTGTGTTGGGTCAGGTGTAGAGAAGGGACCGATCCGATCCTGTATCCTGATTCCACTCCGCAGCTTCCCTGGAATAACGCTGCCCTGAGAAACTCCACTGATCcggattccagttccacagtttactCCCTCTGCAGCTTCTGCCTCAGactgagttttagagctttagcTGTTTGTTTGATTAATATAATCGTCAGTTTGCAGGTTTTTTAATGCTAGTTAATTGTAATGAGAGTAAGGTCGGCGTGCTGAGAGCTGGGAGTGGAGCTGtatctttaaatttaattaatcagtCTTTTTTTTGAGCACCTGCTGATGATTCACATGGAACTGCACCAGGACGCCAAACCAGCCAACAAGACAAGCAAGCCAGCCAGCCTTCTGCAGTCAGTGCATTGCGCAGAAGACACTGGGACTTGAACCAAAACAGCCACACCAAGACCCGTTGAGAGGAGGATGTCTCTGGTatcaaacaaactctggagcagAGcTGGGGTCAGCTTCACCAGTGATCAAGGTGCAGATCCATGGCAGAGTTCAAGTTGATGTCCGTCACATCCAGGAATTCCGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649840.1 True 663 lncRNA 0.46 3 1720811 1727257

Neighbor

gene id symbol gene type direction distance location
dnah9 dnah9 coding downstream 173059 1378988 ~ 1547752 (-)
LOC103038911 LOC103038911 coding downstream 548138 1167227 ~ 1172673 (-)
trnar-ccu NA coding downstream 594344 1126395 ~ 1126467 (-)
trnaq-cug NA coding downstream 595275 1125465 ~ 1125536 (-)
mrpl58 mrpl58 coding downstream 595547 1123216 ~ 1125264 (-)
LOC103042940 map2k4,LOC108424869,LOC108274195,LOC108433489 coding upstream 1766 1729023 ~ 1741475 (-)
LOC103044468 NA coding upstream 17959 1745216 ~ 1753543 (-)
LOC103043761 NA coding upstream 21947 1749204 ~ 1753514 (-)
LOC103040308 NA coding upstream 98232 1825489 ~ 1837284 (-)
cbx7 cbx7,LOC103382143,LOC107554058,LOC107660863,LOC107584093,LOC107709653,LOC106608943 coding upstream 143353 1870610 ~ 1878209 (-)
LOC111192344 NA non-coding downstream 365 1718648 ~ 1720446 (-)
G33545 NA non-coding downstream 546156 1174440 ~ 1174655 (-)
G33539 foxk2 non-coding downstream 564634 1153432 ~ 1156177 (-)
G33441 NA non-coding downstream 799165 912388 ~ 921646 (-)
G33389 NA non-coding downstream 1108743 605749 ~ 612068 (-)
G33690 LOC108413510 non-coding upstream 129711 1856968 ~ 1857715 (-)
G33693 LOC108413510,LOC108273944,LOC100698988 non-coding upstream 135529 1862786 ~ 1863512 (-)
G33731 NA non-coding upstream 248572 1975829 ~ 1976108 (-)
G33732 NA non-coding upstream 249072 1976329 ~ 1976585 (-)
G33759 NA non-coding upstream 347078 2074335 ~ 2074606 (-)
LOC111192416 NA other downstream 1319499 389434 ~ 401312 (-)
G33675 NA other upstream 83329 1810586 ~ 1812622 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other upstream 294814 2022071 ~ 2042303 (-)
G33823 srcap other upstream 441766 2169023 ~ 2177059 (-)
G33836 LOC103393566,LOC105888730 other upstream 467500 2194757 ~ 2196095 (-)
G33904 NA other upstream 576005 2303262 ~ 2309329 (-)

Expression


Co-expression Network