LOC111192348


Basic Information

Item Value
gene id LOC111192348
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2080975 ~ 2083243 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649842.1
ATGGAATTTATCCACTtgtaaacagtaaaagaaagCTATTTCTATTATCAGTATTAGATTTAAATTACAGCTATTTATTATAATAGATGTTTAACACCACCATTGTACATACAAGCAAGgtttttaatgtgtattataAAATGTCTACAAATAttcatacaaataaacatatatatagagTTGTGCAAGTGCCATACTTAATGTCACTCTGCATATTTATGCTTGTGGGTTGGTGTGTCTGCTGCACTTTGCAGTTTAAACCACAAAGGCGGGAATGTTTGGGCAGGAACGCCAGGCTTTGCAGActaatcacagctgctgctgtctgtgtcACGTGACATATAGTTAGGGTATAGGGTACACGGAAGTATAAATTGTCCTTTAGGCTACCATCTTTGAGAGAAATATAAAGTggtatttaaacatgattttgagggcactataaTCTCGGCTTGGCTTTATGTGGTCCAAAATGCATTATGTGTCTCATTACTAAGAAACTCAGTGAAATGAATTTAAATCAACAGCATTTACTAAgccaattttacattttacatttccctATGTATATTGTTATTCAGTACTTATGTTTATAAGCATAAacaatttacagtaaaaaattattttatgaaCAGCACAGTGCTTTATCTAACTCTAATTCAGAACTCACTTTTGGTTTGTTCAGACCTTAAATGTGGCTCAGCCACACACATTTGTATGTGTACCGTTGTTAATGAATGCTAATGATGAAAAAGTGTCCGAATTCACTACCACTACGTAGTTTAATAAATAGTCTAAAAAgcagttaaatattttttttttatgattctgCCATAAAAGTGGTTTATATAAGCAATGTTGCACAGTAGAATGGTGCACCATCTCTTTTGACACAACTAAACCTTACTGCAGATTATATGtaagattatatattttttgtcttggATGTTTTCAGGTGTTGTTTGTTAGATCTCctttaacaataacaatatgcTCTGCCAAAACTGTAAGCTGGAAAATCCTGGCAGTGTTTCAATGTCTTGAGGGCATTGATTCCTTTTGTTTTCCGACCTGTAGTGAGTGGCTTAAAGTTGCCCATGTTTAATGAACTTCATTTGACAGTccataattaaaaagaaaaagaaaagcatgAATACAAAGCGCATTAGGAATTTTGTATTTGAATTGTGTATTTGTCCTGTATGCTTCCATACAGGATTTTAATGCCCATTTTCAGAATTCATCTCTGGCTTGTTTCCCAGACAGAGGAAAAGCATTTTCTAGTTGATATATTTCTTTCAATCAAGAATCTTCATTTACAGTGTTGTATAGATCAGGACTAGGTTAATCCCTGTTTTGGAAACCAACCCATAAGGTCTGACTatagctgcggtccaatctgaagggagctgcccaACTAGGCAGCATTTGCAGGCAGCATAGGCGCGCTCCCGAGAAAAGGACTGTCCCATTCGGAAGGTAGCATGTGCTGCCTACCTGGGCAGCTGCCTTATTTTACCCCAATTCTGAAGGCAGCGTGAGATGTATCCTTCACGGCGAaggcaatcccatgatgcatttccccagctcagagttccagcgctcagatttaaaaacatggcgGACGGAGCCGGCATTGCGAGGGAGTTTCTGTACGAATggaTGAACGTGGGCCGGGGAAGGTGAACGCTggtcagaccggctggaggcagcgttagctccctttatgaatatatatttttttctttgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649842.1 True 1751 lncRNA 0.38 2 2080975 2083243

Neighbor

gene id symbol gene type direction distance location
LOC103022929 slc16a6,LOC108444260 coding downstream 14729 2056100 ~ 2066246 (-)
LOC103047336 LOC108444256 coding downstream 63800 1977614 ~ 2017175 (-)
xrcc6 xrcc6,LOC107709651,LOC107554059 coding downstream 176346 1898185 ~ 1904629 (-)
LOC103046112 NA coding downstream 184982 1890271 ~ 1895993 (-)
josd1 josd1,LOC107660868 coding downstream 191696 1879258 ~ 1889279 (-)
snf8 snf8,LOC107692042,LOC107734219,LOC107554070 coding upstream 34297 2117540 ~ 2120383 (-)
chmp2a chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding upstream 47775 2131018 ~ 2134043 (-)
psme3 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 coding upstream 193514 2276757 ~ 2282984 (-)
dhx8 dhx8,LOC107706906 coding upstream 541695 2624938 ~ 2637751 (-)
LOC111192418 NA coding upstream 1138104 3221347 ~ 3222998 (-)
G33759 NA non-coding downstream 6369 2074335 ~ 2074606 (-)
G33732 NA non-coding downstream 104390 1976329 ~ 1976585 (-)
G33731 NA non-coding downstream 104867 1975829 ~ 1976108 (-)
G33693 LOC108413510,LOC108273944,LOC100698988 non-coding downstream 217463 1862786 ~ 1863512 (-)
G33690 LOC108413510 non-coding downstream 223260 1856968 ~ 1857715 (-)
G33804 LOC108444266 non-coding upstream 45024 2128267 ~ 2130172 (-)
G33833 NA non-coding upstream 108847 2192090 ~ 2192968 (-)
G33835 NA non-coding upstream 111044 2194287 ~ 2194607 (-)
G33853 nbr1,LOC108413416,LOC108273956 non-coding upstream 203027 2286270 ~ 2287428 (-)
G33909 NA non-coding upstream 235365 2318608 ~ 2318897 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other downstream 38672 2022071 ~ 2042303 (-)
G33675 NA other downstream 268353 1810586 ~ 1812622 (-)
LOC111192416 NA other downstream 1679663 389434 ~ 401312 (-)
G33823 srcap other upstream 85780 2169023 ~ 2177059 (-)
G33836 LOC103393566,LOC105888730 other upstream 111514 2194757 ~ 2196095 (-)
G33904 NA other upstream 220019 2303262 ~ 2309329 (-)
G34046 NA other upstream 1097925 3181168 ~ 3194377 (-)
prr15l prr15l other upstream 1699882 3783125 ~ 3789192 (-)

Expression


Co-expression Network