LOC111192350


Basic Information

Item Value
gene id LOC111192350
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3107202 ~ 3189436 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649845.1
ctctctctctctctctctctctctctctctcaaaagtGTACCCCGCTACCCCTGAATTTTCACCCGCGACTGGATTTtaaaacaagcccaatttggtgGGAAAACCGCGAACATGGCAACCCTGACTGAACCAGAGGCAAACGAGTTTTCTCGCAGCATTTAACCCGTTGACTATGCCTCTTTTTTTGCACGTCTTTAAGGTACTTAAGGTGCTTACACAGCGAACGCGGTAGGAGAGGCGCGGCACGCTGACCCCCATAGGATTAAATTGTTTCTAGAGCGGTAGAATAGTGCGTCGCTGCCGCGGAGCAGAGCGGAACGCGGTGCGTTTCCCCGCACATAACCACACCTCTACCGCGCTACCGCTCACCGCGGTCAAAGTTCAACATTGTTCAACTCTGACCTCGCGGCAAGCGGTACCGCCATAGATACCGCGGCAGAAAACGCATGACGTGAACTCACGCGACCAGGGAGAAACTGTAGTCCAAACAACTATAAACACAGGCGAGGTACTAATATTAACGACTAGTGAACACCCTCAGGTGTACATCACTTCTCTACACTCATATAAAGATAACAGGAAGAAGATCAGAATCAGAGCTTTATTCTGAGgctgagagacagatacagatctACAAAACACCGCTCGCAGACGTGACAAGTTTTTAAAAACCCCGCCTGTTATCAACAAGCATACCGCATTCGGTATGTAAGCACCTTTATGCATAATTGGTGATGATGATTGACAGCTTACTCCACCTATAGGAGAAGAGAGGTAATAAACCAAACTCTCTGCCCAAACTGAGAGACCAGAGAGAGGAAACAAAAGGATAACAGATATTGCAAAAATATCGTTCCAACGTTGTTGACACCCAATTAAAAATTAGAACCGTTTCCACACCtctcaaattaaataatatatttttatttgtattatatacgTTTGtagcatttacaaaaatgtcTGTCATTTACTCAACCAAAGCAAGTGTCATAGAGCCTAAAGTCAGTTTACTTTAATCCACCACTTCTAGTAAAACACAGTCCCCAGAGTTTACCGTTGAAGATTTTTAAACAATGCAAGAACCCGTGgtgaagaaaaagaacaaagacaATATATGTATTATGACCAGAGCCTACCTGGAATCATAAGGAGCAAGGCAGACCGTGAGCCAATCCATCACTGGCTACCACAGACACTGACTGCTTCTGGCAGATTCTGCTGAATGTCTAACGAAAGAAGCTTTTGCCCTCGCCTGACAGTCTGCAGTTCACACAGCATTTATCTTCATGACACTGAAGTCAGCGATGCCTCTGCGCCTGATGAGGATGGGTATCAGGTAAGAGAGGTCGAAGATATAAGATACTCTGGATGAGAATCTTTTTTGACTGCTCCTTTCACATTCACAGGACCAGGCTGTGAATCGACCTACTTACCTTTTCACATAAGCTTGACTTCAGTGAGAGAAATGGTCTGTAACATCCTTTGATAAAAGTCAGGGAGCTGAAGGCATTTTGTGTAGACTAGCTTAAGTTTGAAACTTCACCATTGAGCTGAATACTCAAAtgatttattcatgtttatgcTTCAGATTTGGACAGAACTGTAGACTGGTCATGAAAATTGTTTGCCCAGAGATTTCATTAGCCTGCGCTGCAAAAACAAACATGCTCTTTTCCCAGTTTTTCAAACacagtaccaaaaaaaaaatgctgctgactatatacatatattctgtttttaaaacagtgaaGCATTATACTCTCAACTTACAACAACACTATGAGGTAGCTCAGTGACACAGCCAAACATGATAACATCTGCAAAGTGGCGTATTGGAGAGAACTACCCTTGACATTTCTTTGGCTTGAACGCACTTACACTGGGAATTACATGGGAATTATGTTGTAATTCTGAACTAGACTGGAATTGATGTTTTTGGCGTGATCATACATATCTGATCCATATTGTTTTGATCCTGCTTGGAGGAAACAATCCCAGTGGACAGTTATAGCTTAGTTTCCAGGGATGATAATTGatgataattatttaatttgatgAGAGTGGGTTTGAAAGGAAGACATGGAAGACAAATTGTCAAAATGCCAGTGTTTGCTTTGCTCTTACAGTGTCATTCAGCAGCCCCAGCAGGATTCCAAGAACTGTTATTACAAAAACAACTATAAaatcagccatttttcattcatCAGGGTGAATTCTTAACTACATTTTTCAGATAAAACAACTAGAACAACTTAAATTAATTGCAGAAACGAATACACCCTACATGCAATAAATTGTCTACTAGTAAATGCTCTGGGGCAAAAATTTGGGATAGCAGACAAAATGAGTCTTAGAATATGCCTGGGTCCTcattattttcaataaacataTCAAAAGATAGACACTTGATTACAGTCCCTATTATTTGtgattgattatatatatacaccaaacatgcacaacattatgaccagctccttgtttctacacccataaTCAATTTTGTCAGGTTCGTTGAACATGTTTAACtttgtagtcctgtatctgtttctctacatactttattattttcttcctttcaccctgttctttaatggtcggAACCCCATAGGATAGAACCActacagagcaggtattatttgtg

Function

GO:

id name namespace
GO:0008865 fructokinase activity molecular_function
GO:0004396 hexokinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649845.1 True 2648 lncRNA 0.41 3 3107202 3189436

Neighbor

gene id symbol gene type direction distance location
dhx8 dhx8,LOC107706906 coding downstream 469451 2624938 ~ 2637751 (-)
psme3 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 coding downstream 824218 2276757 ~ 2282984 (-)
chmp2a chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding downstream 973159 2131018 ~ 2134043 (-)
snf8 snf8,LOC107692042,LOC107734219,LOC107554070 coding downstream 986819 2117540 ~ 2120383 (-)
LOC103023976 snx11,LOC103023976,LOC108444262,LOC105888804 coding downstream 1019635 2074630 ~ 2087567 (-)
LOC111192418 NA coding upstream 31911 3221347 ~ 3222998 (-)
ogfod3 ogfod3,LOC106959269 coding upstream 151176 3340612 ~ 3380599 (-)
LOC103047433 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC107691212,LOC103367354 coding upstream 193339 3382775 ~ 3390578 (-)
myo1d myo1d,si:ch211-94l19.4,LOC107743773 coding upstream 214511 3403947 ~ 3532389 (-)
LOC103046317 LOC103046317,LOC108426453,LOC107565668,LOC107754097,LOC107677886,LOC108274275,LOC107743772 coding upstream 355997 3545433 ~ 3555219 (-)
G34036 NA non-coding downstream 21796 3060369 ~ 3085406 (-)
G33944 etv4,LOC107743788 non-coding downstream 504013 2574387 ~ 2603189 (-)
G33939 NA non-coding downstream 563091 2515287 ~ 2544111 (-)
G33910 NA non-coding downstream 739462 2362350 ~ 2367740 (-)
G33911 NA non-coding downstream 773081 2333274 ~ 2334121 (-)
G34101 NA non-coding upstream 202193 3391629 ~ 3399113 (-)
G34159 NA non-coding upstream 539206 3728642 ~ 3728960 (-)
G34166 pnpo non-coding upstream 588464 3777900 ~ 3781741 (-)
G34218 rnf40,LOC108273672,LOC107743762,LOC107677883,LOC107563784,LOC107565773 non-coding upstream 650567 3840003 ~ 3842727 (-)
LOC103038927 NA non-coding upstream 691146 3880582 ~ 3883412 (-)
G33904 NA other downstream 797873 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 911107 2194757 ~ 2196095 (-)
G33823 srcap other downstream 930143 2169023 ~ 2177059 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other downstream 1064899 2022071 ~ 2042303 (-)
G33675 NA other downstream 1294580 1810586 ~ 1812622 (-)
prr15l prr15l other upstream 593689 3783125 ~ 3789192 (-)
G34214 NA other upstream 647185 3836621 ~ 3883469 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 1782262 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 2066183 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 2714152 5903588 ~ 5928154 (-)

Expression


Co-expression Network