LOC103039044


Basic Information

Item Value
gene id LOC103039044
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 7230253 ~ 7231321 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649864.1
CTTTACTGCCTCGTGACGGCAGTGCGAGGCATCTGGAGGATTGCAGTTGCGATTTCTGACTGGGAAAAGGTGTGAGTGCAGCTTCTAAATCCATAGCCGCTATCTGCTTCACTGCAAGCAACCTACTTGTCCAACCTTGAGGaacaataatgataaaatgaGAAGAAGcctgaaaaaagggaaaaaatgcaACAGCTGATAAAAAAGATGGCAAGAATGAGAGAAGTCCCCAAGTGCAACCTTTTCCACGGCAAATTCTACTGTCTTTCTGGTGGTTTTGAAGAACACATCCACATAGATGCAGGGCTCGGACTCCAGTGGTTCAGTCTCAGGAGCAGTTCCGGGAGCAGTGATGGAAATCCATAaacggagcagcagcagcagcaggttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649864.1 True 391 lncRNA 0.47 3 7230253 7231321

Neighbor

gene id symbol gene type direction distance location
acsf2 acsf2 coding upstream 118062 7078789 ~ 7112191 (+)
LOC103036712 NA coding upstream 161725 7057908 ~ 7068528 (+)
slc16a5 NA coding upstream 173824 7043482 ~ 7056429 (+)
kctd2 kctd2,LOC108410512,LOC107666921,LOC107727321,LOC107582756 coding upstream 189568 7029131 ~ 7040685 (+)
LOC103033683 LOC108410508 coding upstream 202094 7021847 ~ 7028159 (+)
LOC103039861 stxbp4 coding downstream 44426 7275747 ~ 7292804 (+)
LOC103040176 LOC108443565 coding downstream 74985 7306306 ~ 7335081 (+)
ankfn1 ankfn1,LOC107684130,LOC107702427 coding downstream 121765 7353086 ~ 7466457 (+)
nog nog coding downstream 241586 7472907 ~ 7475245 (+)
LOC103035888 LOC107566522,LOC108435270,LOC107755508,LOC107684054,LOC108273414 coding downstream 352506 7583827 ~ 8281690 (+)
G35102 NA non-coding upstream 70937 7125954 ~ 7159316 (+)
LOC111192361 NA non-coding upstream 111086 7115855 ~ 7119167 (+)
G35096 NA non-coding upstream 153096 7076688 ~ 7077157 (+)
G35031 NA non-coding upstream 179624 6987832 ~ 7050629 (+)
G35143 NA non-coding downstream 2314 7233635 ~ 7233863 (+)
G35148 NA non-coding downstream 90599 7321920 ~ 7322957 (+)
G35244 NA non-coding downstream 876839 8108160 ~ 8108470 (+)
G35299 NA non-coding downstream 1175530 8406851 ~ 8407393 (+)
G35300 NA non-coding downstream 1176159 8407480 ~ 8408610 (+)
G35021 NA other upstream 326256 6902417 ~ 6903997 (+)
G34931 NA other upstream 498829 6730954 ~ 6731424 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other upstream 566646 6592607 ~ 6663607 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other upstream 688793 6502145 ~ 6541460 (+)
LOC103045604 LOC108426437,LOC107683136 other upstream 972203 6246646 ~ 6258050 (+)
fasn fasn other downstream 1154852 8386173 ~ 8438865 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other downstream 1210811 8442132 ~ 8472989 (+)
LOC103024481 adamts14,LOC103367006 other downstream 1488033 8719354 ~ 8851392 (+)
G35744 mrpl38 other downstream 3240059 10471380 ~ 10475783 (+)
dock1 dock1,LOC107740868 other downstream 3516316 10747637 ~ 11001805 (+)

Expression


Co-expression Network