LOC111192374


Basic Information

Item Value
gene id LOC111192374
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13965435 ~ 13970081 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649875.1
ACTCCCGTCGGCATACCAGCCACGCTCAACCAGCCCCCCAATAGTGTACCCGCCTGCCTTTAAATACCTTTAGCCCATCCCCGGCTAAACCAACAAGTAATTAACTTGAGGGCAGGTGGGTAAGACAACTATACATAATTGTATATGtacaatattaacatatttacaaacAGAATGACATGCATGTAAACATTTGGACGTCCAGGTAAGTATTGATGATAATTTTACAatgttaatgtattattttctctgttctctttttcACAGGTACCCCCAGACTCCCCTGCCCCAGGACACCCCTTGGTCTCTACCCAGACCTTAAGGACCCGGGTGGCTCGCGCGCCGCCATTTCCACAGGATCCAGatttatcataaagat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649875.1 True 379 lncRNA 0.45 3 13965435 13970081

Neighbor

gene id symbol gene type direction distance location
ccser2 NA coding upstream 335421 13525763 ~ 13630014 (+)
nudt13 nudt13 coding upstream 456543 13501047 ~ 13508892 (+)
arg1 arg1 coding upstream 493471 13460651 ~ 13471964 (+)
heatr1 heatr1 coding upstream 505464 13423037 ~ 13459971 (+)
LOC103038526 NA coding upstream 606147 13352855 ~ 13359288 (+)
btbd16 NA coding downstream 653148 14623229 ~ 14645576 (+)
LOC103046321 plekha1 coding downstream 681569 14651650 ~ 14702499 (+)
LOC103041103 htra1,LOC107660481,LOC107745581 coding downstream 750798 14720879 ~ 14775197 (+)
LOC103041718 LOC108435036 coding downstream 828829 14798910 ~ 14822163 (+)
get4 get4 coding downstream 853572 14823653 ~ 14834347 (+)
G36298 NA non-coding upstream 155197 13809742 ~ 13810238 (+)
G36276 NA non-coding upstream 288304 13676813 ~ 13677131 (+)
G36273 NA non-coding upstream 302588 13662430 ~ 13662847 (+)
G36244 NA non-coding upstream 400702 13561128 ~ 13564733 (+)
G36175 NA non-coding upstream 487496 13475141 ~ 13477939 (+)
G36322 NA non-coding downstream 421223 14391304 ~ 14443156 (+)
G36370 NA non-coding downstream 492061 14462142 ~ 14462391 (+)
G36372 NA non-coding downstream 508737 14478818 ~ 14479322 (+)
G36382 LOC108435041,LOC107716480,LOC107660482,LOC107745560 non-coding downstream 610453 14580534 ~ 14589788 (+)
LOC111192375 NA non-coding downstream 646642 14616723 ~ 14618634 (+)
LOC103039668 LOC108435045 other upstream 444733 13502246 ~ 13520702 (+)
G35995 NA other upstream 1262379 12702305 ~ 12703056 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other upstream 1398494 12111690 ~ 12566941 (+)
G35967 NA other upstream 1594473 12366540 ~ 12370962 (+)
G35903 NA other upstream 2163231 11801458 ~ 11802204 (+)
G36371 NA other downstream 493056 14463137 ~ 14463639 (+)
LOC107197918 NA other downstream 594844 14564925 ~ 14567912 (+)
G36439 LOC103041415 other downstream 819299 14789380 ~ 14790833 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other downstream 1462748 15432829 ~ 15440157 (+)
cabcoco1 NA other downstream 2243709 16213790 ~ 16233839 (+)

Expression


Co-expression Network