LOC107197179


Basic Information

Item Value
gene id LOC107197179
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 24385736 ~ 24388302 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649910.1
AACATGATTTATTAACGTTCCTGACTTTTCTCAAAGTATTACACAAACACCATCGTTTCGTCACAGACAGTTTCACTGCTTTAATAACAATCACTCACGTATTTGGAAGCGTTTTGCATTTAataatttgctttattttttttttttttactttctttagacactcttttattatattgacTTTAAAATTAGATGATTTCCCCGTAAAACGCTACTCTTTACAGTTTCAGCATAATCATTTCTGTTAAAGTTCGACTCATTTTCCTGAACTGATTCGActgattcagttttttttcgagctttaattttattaacGATACGCTTCCTGATTCTGAATCGCGCAGACGGGACTCGGCACAGGCTTCGCGCGTCACAGGCATTTACAGGCATTTCGCGCGCGCGCAGTACAGGCATCTCGCGCGGAAGAGTTTGTTTAACTATGGATATTTTGCCGAAGAGGAGAGAACAGATTTTACAgtcTGTTTTCAATCTCATCTCTACAGTTGTTGATGGATCTCAGGAACATTCACGTGACACATTTCTAGAAATTGTACAGAGCATTAATGAACTCTTTCAAAATTTCCCAAAACATGCCTATAACAATTCCAATTTAACAAATGAGGATAGAAAATATGTGGAAATAAAGCTTCAACAAATCGATATtactaaaaatcaaaatcaGTTTGGGTTTGCTGTAATTATAGACATTAATAATGATACAGTAGAGTATACTGAGTTTGTTAAACCTAAGGAAAAAGAAGGTAACATTGATCGCCATACACAGGAGACAAAATATCATTGTGAAGAAATAATTATCCATCAGATTATAGAGAAGGTTAAGGATAGATCTGGACTAAAAATAATTATCTTCACTTATTACAGCCCCTGCCTTTTTAAAAAGGGTGGTGTATCTTGTATGAGTATGTTAACTAAAGCTGCAGATGATTGGAAACCTCATAACATATCCACAACagttattttaaagaatattatCATCTTCAACATTCAATAACAAGATTTATTTCCAGTCTTAATGCTGGAAATTTAAAAGCCATCTCTAGCTGTTCTGATTACAGTGCATATGAAACAGAGGTAAGTATACAACATTTACCAAAGGTTGAGgaagttttatttgtattagtgaAGAAAATTCTTAATCTGGATAGGATATTGCCAGTACAGAAGCCACTTAAAATAGAGTGGATAAAAAACAGAGGAACTTTGATGAAGAAAATTGACTCACCTTTAAAGAAGTTCTTTATTACGTGTTTGGACAAAGACCTACAAAACTTACAAATGTTTCCTCAAACTTTGAATGAGTATTATAACCTAATTCAACCATTCCATGAGTTAAAAGGTTTTTGGGTAATGATTTGCGATGCAATGTATACAAAACATTGCAAAGACATATTTATTCAATATTATAACAAGgcaatttttaatatttataagtcAAATGCTTTACATGAAAAATCTTTGCTGATTTCATGCTTACAAAATGTGGATGACCACTTTTAacgacaattaaaaaaataaaaaaacaattaaaaaaacatggctACGGGAGGAGATCTTCGGGACCAAGATAATGGATTACAACTGAGCACGAAAAACGCTTTGCCGTGCTGTGATCATGTATTCAGAAACCTATTTCGATTTTGTTCAACTCGAtgatgtttggagatatttcACTTTACTGTTGGCCAGATGTTATACTGGAACCCAGGACTATTAACAGCACTACGTCATTGCACTATTTTAAACATGTAATTAACAAGAATTCAAGCACAACAAGCAACTTTTTTGAATTCTAGATTTTCAGTGTAACAAAATATTACagatttttgtatattatttgaATTAGCTGTAATTCAAATAAGATTTGTATTACAGTTTGTCAATAAACAGTAAAGCTATGGAACCAGTTATAAATGCAAAAACGCATGGACTGTCTGCTCCCTCCTGAGACTTTGACACATTTTCTTTGACATAAGTTGACAATAAAACTGTGTCTTATGTTCTATTGTTAATAAAAATATCGCTTTTTGAAATTA

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042612 MHC class I protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649910.1 True 2054 lncRNA 0.33 2 24385736 24388302

Neighbor

gene id symbol gene type direction distance location
phyhipl phyhipl,phyhiplb,LOC107727060,LOC107746456,LOC107654056,LOC107695536 coding upstream 700178 23628687 ~ 23685558 (+)
bicc1 bicc1,LOC107653928,LOC107695510 coding upstream 791694 23418853 ~ 23594042 (+)
tfam NA coding upstream 989358 23387980 ~ 23396378 (+)
LOC111192392 LOC108416223 coding upstream 1385113 22998679 ~ 23000623 (+)
dkk1 dkk1 coding upstream 2014249 22368776 ~ 22371487 (+)
LOC111192424 NA coding downstream 12816 24401118 ~ 24402659 (+)
LOC111192396 LOC108411010 coding downstream 243401 24631703 ~ 24648610 (+)
LOC103037544 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding downstream 264327 24652629 ~ 24663580 (+)
mto1 mto1 coding downstream 308834 24697136 ~ 24713813 (+)
LOC103035992 NA coding downstream 342598 24730900 ~ 24744132 (+)
G38723 NA non-coding upstream 433834 23830486 ~ 23951902 (+)
G38717 NA non-coding upstream 539909 23778274 ~ 23845827 (+)
G38710 NA non-coding upstream 600990 23783965 ~ 23784746 (+)
G38633 NA non-coding upstream 861866 23520932 ~ 23523870 (+)
G38628 NA non-coding upstream 871768 23495072 ~ 23513968 (+)
G38832 NA non-coding downstream 38144 24426446 ~ 24426725 (+)
G38822 NA non-coding downstream 55332 24443634 ~ 24444406 (+)
G38833 NA non-coding downstream 69979 24458281 ~ 24514991 (+)
G38837 LOC108443171 non-coding downstream 78087 24466389 ~ 24475428 (+)
G38851 NA non-coding downstream 116529 24504831 ~ 24510224 (+)
G38817 NA other upstream 411216 23974161 ~ 23974520 (+)
trnar-ccu_27 NA other upstream 635543 23750121 ~ 23750193 (+)
trnar-ccu_26 NA other upstream 635645 23750019 ~ 23750091 (+)
trnar-ccu_25 NA other upstream 635747 23749917 ~ 23749989 (+)
trnar-ccu_24 NA other upstream 635849 23749815 ~ 23749887 (+)
G38870 NA other downstream 228482 24616784 ~ 24617452 (+)
G39179 NA other downstream 986657 25374959 ~ 25375344 (+)

Expression


Co-expression Network