LOC103038927


Basic Information

Item Value
gene id LOC103038927
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3880582 ~ 3883412 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_455620.2
CACACATCCCCACTTATCAGGTATCATATAAATACCCATGTGGTAGAGATAGCTCTCAAACACTTCCTAGCAAAGCTGTCTGGATTGAGGAGctgtttagccAGAATTCAATTCTCCTCCACTCCTTTTTACTGCAAAATGGGGCGCTATATGCTGATCCTGGCTGTGACTGTAACTCTCGTCTTAGTTGCCCAGGCCCTGAAATGTAAACACTGCTCGGACATTCAAAAGATGCCGCCTTACTGTGAAAAAACAGAGGAACGAGAATGCAGTATTGGCTCCAATAAGTGCATTACCATCGACTTTGCAAAACCAGCATATGGTCAAGTGCGCAGATGTGCCACTCACAGAGAATGTGAAGATAAAGTGCCTAGCCAGGTGCAGATACACTGCTGTGACGAAGACCTCTGCAACTGACCTTCCTATACTTATAGAGAGAAGAGGGGAGCAAGTCCACTTTAAATAAAGCCAAACTATCTCtagcattatttataattaatttaacaaaTGAATAGCTGCCAAAATGTAGCCCTCACTAAATGTGTTCACTAAAAATTCAttattaaatgaaacaaaataaataacatgcATGCAAAAGAAGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_455620.2 True 603 lncRNA 0.41 4 3880582 3883412

Neighbor

gene id symbol gene type direction distance location
LOC103039858 LOC108426464 coding downstream 10406 3861574 ~ 3870176 (-)
ccdc189 NA coding downstream 41025 3836623 ~ 3839557 (-)
cbx1 cbx1,cbx1b,LOC107677876 coding downstream 51219 3823918 ~ 3829363 (-)
LOC103042441 LOC108426417,LOC107677865,LOC108273677 coding downstream 73564 3802912 ~ 3807018 (-)
mrpl10 NA coding downstream 104397 3770639 ~ 3776185 (-)
LOC103038619 NA coding upstream 602 3884014 ~ 3893365 (-)
LOC103036928 NA coding upstream 204691 4088103 ~ 4097955 (-)
LOC103021465 LOC108426423,LOC108273974,LOC107754115 coding upstream 264776 4148188 ~ 4161856 (-)
LOC103044368 LOC108426474 coding upstream 336055 4219467 ~ 4440792 (-)
atrnl1 atrnl1,atrnl1b,LOC107755548,LOC107689951,LOC107708169 coding upstream 708622 4592034 ~ 4703993 (-)
G34218 rnf40,LOC108273672,LOC107743762,LOC107677883,LOC107563784,LOC107565773 non-coding downstream 37855 3840003 ~ 3842727 (-)
G34166 pnpo non-coding downstream 98841 3777900 ~ 3781741 (-)
G34159 NA non-coding downstream 151622 3728642 ~ 3728960 (-)
G34101 NA non-coding downstream 481469 3391629 ~ 3399113 (-)
LOC111192350 NA non-coding downstream 691146 3107202 ~ 3189436 (-)
G34230 NA non-coding upstream 19922 3903334 ~ 3903569 (-)
G34232 NA non-coding upstream 26877 3910289 ~ 3910512 (-)
G34238 NA non-coding upstream 41030 3924442 ~ 3924669 (-)
G34240 NA non-coding upstream 42069 3925481 ~ 3925690 (-)
G34265 LOC108426470 non-coding upstream 119512 4002924 ~ 4003802 (-)
prr15l prr15l other downstream 91390 3783125 ~ 3789192 (-)
G34046 NA other downstream 686205 3181168 ~ 3194377 (-)
G33904 NA other downstream 1571253 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 1684487 2194757 ~ 2196095 (-)
G33823 srcap other downstream 1703523 2169023 ~ 2177059 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 1088286 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 1372207 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 2020176 5903588 ~ 5928154 (-)
G34770 NA other upstream 2052423 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 2165589 6049001 ~ 6147311 (-)

Expression


Co-expression Network