G52589


Basic Information

Item Value
gene id G52589
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3147928 ~ 3149432 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU59910
TTTTTTTTTTTTTTAGAAAATGACCGATCATTTCGCATTTCGTTTCGCTAGATAAGACCCTTATTCCTCGTCTGGTATCGTTTAAAGCAGTTTGAAGCTGCACTGAAACTGTAATTTTGACCTTCAACCGTTTGGAGACCATTGAAGTCAACTATAAGGAGAATAATCCTGGAATGTTTTCATCAAAAACCTTAAGTTCTTTTCGACTGAAAAAAGAAGGACATGGACATCTTGGATGACATGGGTGTGAGTAAATTATCAGGAAATTTTTATTTGAAAGTGGACTAATCCTTTTAGGCCCGTTCACACTAACGATAATTATATTTGCGTCCACACCAATGAACGATAACGGTCTGTCTAAGCTCACGCGCTACGGTTTCAAAGTGTGTACATTGTTTTTGCTGTTCTTGTTGCATTTACACGGCTTTAACCAGCAGGTATCCTCAGCATGTTATGTTTCGAGTGAATAGCTAGTGCAATCGATCTAATCTAACAGTGAATTTAGCTAACGAAGTCAATATAGTGGAATAAAAACAACGCCTAGTCTTTTTCACTGCAACGTCAAAAGAAGGAAGACAATGATGTTGAAACTAGCGCTGGATACCTGAGGTAATTGTTACACTGTAATTGTTGCAATTGCTAGCCTGGCATATATCGTTAATACTTCTCACCATTTATTGTTTTCCATACATCCATTTTCTTTAAAGTAGCCTTGAAAAAGGGGGTTTGATTTGTCAAACAGTGGTGGCTTTTTCTGGACCTCGGCGACTAACTCCGCAGTGTCGTCTGCCATTTTAAATGCGCGAGCCCTTAAATTAGAATGGATTCTGATTGGCTGTCAGTGTTTTATCGTTCAACAGCTGGGAAAAAAATCACTCTGAAAGTGATCCCAACAATATCGTTTCTCTATATCGTTATCGTTATCGTTATAGCTGTGGTGTGGACTCTGCTATTCTTTTATATTTAGAATGATTTTTAAAACTATATCTTTATCATTATCTTTATAGTTATCATTCTTGGTGTGAATGGGCCTTTAGAATCGCATTATGAAAAATGTGAACGGAACCAGACTGGACAACTAGTTGTCTGTCACACAGAGAGAAACACTCATCTTCTTTGTATTGCGGGTTTTCGTGTGCAGCTTACAGTGACAGAGATATGAGCTGTGTGTCATCTGAAAGTTTTAGATTCACATCTAGTCACTGTTCTCCAACGGAGCTGCTCATGTTTTGTGTTTTACGCAACTAAAATGCTCCTCTATCCACCCAGATATAAAAGCTGCTGTCGGTTAATGAAGATATGACAGATGAATTCGACTTCATACAAGAAGTTCATACAGACAGTAGTAGGCCTATTCCAGACGCTACTGTAGGTTGTGTGCACGAGACATTTCGAGGTGTACATCTGTAAGTAAATGCGGTTGTCAATCCTCAAAACTGCCTGAATGATTAGGTTTCTGCAAAAATCATCATTTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59910 True 1478 lncRNA 0.38 2 3147928 3149432

Neighbor

gene id symbol gene type direction distance location
CI01000009_03140599_03143635 SLC35A5 coding downstream 4293 3140599 ~ 3143635 (-)
CI01000009_03009238_03025860 NA coding downstream 121991 3008360 ~ 3025937 (-)
CI01000009_03006152_03007243 NA coding downstream 140073 3005386 ~ 3007855 (-)
CI01000009_02975388_02982670 NA coding downstream 162537 2975388 ~ 2985391 (-)
CI01000009_02916137_02917550 FUNDC1 coding downstream 230378 2915641 ~ 2917550 (-)
CI01000009_03171440_03194494 DCAF6 coding upstream 22008 3171440 ~ 3195145 (-)
CI01000009_03226613_03234223 ME3.L, ME3 coding upstream 76336 3225768 ~ 3234223 (-)
CI01000009_03235111_03242103 NA coding upstream 85582 3235014 ~ 3242103 (-)
CI01000009_03244366_03259106 ILDR2 coding upstream 94166 3243598 ~ 3259106 (-)
CI01000009_03261739_03262843 NA coding upstream 111606 3261038 ~ 3262843 (-)
G52518 NA non-coding downstream 65491 3081991 ~ 3082437 (-)
G52566 NA non-coding downstream 76540 3071161 ~ 3071388 (-)
G52557 NA non-coding downstream 98275 3049098 ~ 3049653 (-)
G52556 NA non-coding downstream 101831 3045889 ~ 3046097 (-)
G52503 NA non-coding downstream 114251 3027695 ~ 3033677 (-)
G52494 NA non-coding upstream 831 3150263 ~ 3156146 (-)
G52496 NA non-coding upstream 53333 3202765 ~ 3207426 (-)
G52521 NA non-coding upstream 71300 3220732 ~ 3221942 (-)
G52593 NA non-coding upstream 73200 3222632 ~ 3222961 (-)
G52592 NA non-coding upstream 74058 3223490 ~ 3223799 (-)
CI01000009_02885473_02893975 NA other downstream 248521 2883688 ~ 2893975 (-)
G52410 NA other downstream 585395 2551724 ~ 2562533 (-)
G52098 NA other downstream 1740301 1401932 ~ 1407627 (-)
G52828 NA other upstream 1067988 4217420 ~ 4231469 (-)
G53515 NA other upstream 2352963 5502395 ~ 5505248 (-)
G55814 NA other upstream 5276389 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 5708720 8856310 ~ 8860563 (-)

Expression


Co-expression Network