trnam-cau_18


Basic Information

Item Value
gene id trnam-cau_18
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1121801 ~ 1121872 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnam-cau_18
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCGAAACCATCCTCTGCTA

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
trnam-cau_18 True 72 tRNA 0.60 1 1121801 1121872

Neighbor

gene id symbol gene type direction distance location
trnar-ucg NA coding upstream 333 1121396 ~ 1121468 (+)
LOC103037439 LOC108424843 coding upstream 1171 1114588 ~ 1120630 (+)
LOC103026642 LOC108424836 coding upstream 148319 970636 ~ 973482 (+)
trnac-gca_9 NA coding upstream 240363 881367 ~ 881438 (+)
LOC103022594 LOC108424886 coding upstream 271539 838305 ~ 850262 (+)
wdr45b wdr45b,LOC107598578 coding downstream 8083 1129955 ~ 1138168 (+)
foxk2 foxk2,LOC107719587 coding downstream 16567 1138439 ~ 1156171 (+)
LOC103039538 LOC108424875 coding downstream 138778 1260650 ~ 1366518 (+)
myocd myocd coding downstream 477068 1598940 ~ 1721902 (+)
LOC103043447 LOC101477534,LOC105888841,LOC102192639,LOC100710639,LOC102295130,LOC103368359 coding downstream 637736 1759608 ~ 1782752 (+)
LOC111192341 NA non-coding upstream 75298 1039042 ~ 1046503 (+)
G33454 NA non-coding upstream 130707 988920 ~ 991094 (+)
G33413 lasp1,LOC108424884,LOC108274031,LOC105905439,LOC108258608,LOC107567378,LOC107745925 non-coding upstream 177332 858648 ~ 944469 (+)
G33426 NA non-coding upstream 200243 912388 ~ 921558 (+)
G33329 NA non-coding upstream 509690 606044 ~ 612111 (+)
LOC111192399 NA non-coding downstream 63193 1185065 ~ 1221130 (+)
G33511 NA non-coding downstream 221538 1343410 ~ 1344921 (+)
LOC111192343 NA non-coding downstream 425803 1547675 ~ 1557290 (+)
G33609 NA non-coding downstream 606249 1728121 ~ 1731958 (+)
G33611 map2k4,LOC108424869,LOC108274195,LOC103366173,LOC107719678,LOC107556463 non-coding downstream 611054 1732926 ~ 1735977 (+)
trnal-aag NA other upstream 129283 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 136420 983167 ~ 985381 (+)
LOC111192417 NA other upstream 697330 419010 ~ 424471 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 889884 181069 ~ 231917 (+)
LOC103039306 pcgf5,LOC108410714,LOC106589380 other upstream 955411 128356 ~ 166390 (+)
LOC111192342 dnah9 other downstream 247301 1369173 ~ 1388019 (+)
amz2 amz2 other downstream 928870 2050742 ~ 2056963 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 2442158 3564030 ~ 3659132 (+)
G34309 NA other downstream 3049179 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 3760684 4882556 ~ 4924766 (+)

Expression


Co-expression Network