trnar-ccu


Basic Information

Item Value
gene id trnar-ccu
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1126395 ~ 1126467 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnar-ccu
GCCCCAGTGGCCTAATGGATAAGGCACTGGCCTCCTAAGCCAGGGATTGTGGGTTCGAGTCCCATCTGGGGTG

Function

NR:

description
PREDICTED: phospholipase B-like 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ccu True 73 tRNA 0.60 1 1126395 1126467

Neighbor

gene id symbol gene type direction distance location
trnaq-cug NA coding downstream 859 1125465 ~ 1125536 (-)
mrpl58 mrpl58 coding downstream 1131 1123216 ~ 1125264 (-)
LOC103032113 LOC108424879 coding downstream 13712 1070117 ~ 1112683 (-)
LOC103025106 LOC103025106,LOC108424880,LOC107654006,LOC108273509,LOC107988878,LOC106613508 coding downstream 75228 1046542 ~ 1051167 (-)
LOC103024569 LOC103024569,LOC108424881,LOC105905426,LOC103382382,LOC105007889 coding downstream 135314 986339 ~ 991081 (-)
LOC103038911 LOC103038911 coding upstream 40760 1167227 ~ 1172673 (-)
dnah9 dnah9 coding upstream 252521 1378988 ~ 1547752 (-)
LOC103042940 map2k4,LOC108424869,LOC108274195,LOC108433489 coding upstream 602556 1729023 ~ 1741475 (-)
LOC103044468 NA coding upstream 618749 1745216 ~ 1753543 (-)
LOC103043761 NA coding upstream 622737 1749204 ~ 1753514 (-)
G33441 NA non-coding downstream 204749 912388 ~ 921646 (-)
G33389 NA non-coding downstream 514327 605749 ~ 612068 (-)
G33296 NA non-coding downstream 656756 418513 ~ 469639 (-)
G33290 NA non-coding downstream 752249 370373 ~ 374146 (-)
G33289 NA non-coding downstream 753630 369727 ~ 372765 (-)
G33539 foxk2 non-coding upstream 26965 1153432 ~ 1156177 (-)
G33545 NA non-coding upstream 47973 1174440 ~ 1174655 (-)
LOC111192344 NA non-coding upstream 592181 1718648 ~ 1720446 (-)
LOC111192345 NA non-coding upstream 594344 1720811 ~ 1727257 (-)
G33690 LOC108413510 non-coding upstream 730501 1856968 ~ 1857715 (-)
LOC111192416 NA other downstream 725083 389434 ~ 401312 (-)
G33675 NA other upstream 684119 1810586 ~ 1812622 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other upstream 895604 2022071 ~ 2042303 (-)
G33823 srcap other upstream 1042556 2169023 ~ 2177059 (-)
G33836 LOC103393566,LOC105888730 other upstream 1068290 2194757 ~ 2196095 (-)
G33904 NA other upstream 1176795 2303262 ~ 2309329 (-)

Expression


Co-expression Network