trnar-ccu_3


Basic Information

Item Value
gene id trnar-ccu_3
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 23747673 ~ 23747745 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnar-ccu_3
ggctccatagctcagtggACAGAGCGCTGGTCTCCTAAACCAGAGGTCGCGAGTTCGATTCTCGCTGGGGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ccu_3 True 73 tRNA 0.59 1 23747673 23747745

Neighbor

gene id symbol gene type direction distance location
phyhipl phyhipl,phyhiplb,LOC107727060,LOC107746456,LOC107654056,LOC107695536 coding upstream 62115 23628687 ~ 23685558 (+)
bicc1 bicc1,LOC107653928,LOC107695510 coding upstream 153631 23418853 ~ 23594042 (+)
tfam NA coding upstream 351295 23387980 ~ 23396378 (+)
LOC111192392 LOC108416223 coding upstream 747050 22998679 ~ 23000623 (+)
dkk1 dkk1 coding upstream 1376186 22368776 ~ 22371487 (+)
LOC111192424 NA coding downstream 653373 24401118 ~ 24402659 (+)
LOC111192396 LOC108411010 coding downstream 883958 24631703 ~ 24648610 (+)
LOC103037544 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding downstream 904884 24652629 ~ 24663580 (+)
mto1 mto1 coding downstream 949391 24697136 ~ 24713813 (+)
LOC103035992 NA coding downstream 983155 24730900 ~ 24744132 (+)
G38633 NA non-coding upstream 223803 23520932 ~ 23523870 (+)
G38628 NA non-coding upstream 233705 23495072 ~ 23513968 (+)
G38611 NA non-coding upstream 293911 23453364 ~ 23453762 (+)
G38585 ube2d2,ube2d1b,ube2d1,LOC105891213,LOC107717106,LOC107553913,LOC106607701 non-coding upstream 360252 23380968 ~ 23387421 (+)
G38589 NA non-coding upstream 392548 23349878 ~ 23355125 (+)
G38717 NA non-coding downstream 30529 23778274 ~ 23845827 (+)
G38710 NA non-coding downstream 36220 23783965 ~ 23784746 (+)
G38723 NA non-coding downstream 82741 23830486 ~ 23951902 (+)
LOC107197179 NA non-coding downstream 637991 24385736 ~ 24388302 (+)
G38832 NA non-coding downstream 678701 24426446 ~ 24426725 (+)
trnar-ccu_2 NA other upstream 30 23747571 ~ 23747643 (+)
trnar-ccu_1 NA other upstream 132 23747469 ~ 23747541 (+)
plce1 plce1,LOC107743958 other upstream 2450850 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 2618909 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 2716876 21019169 ~ 21030797 (+)
trnar-ccu_4 NA other downstream 30 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 132 23747877 ~ 23747949 (+)
trnar-ccu_6 NA other downstream 234 23747979 ~ 23748051 (+)
trnar-ccu_7 NA other downstream 336 23748081 ~ 23748153 (+)
trnar-ccu_8 NA other downstream 438 23748183 ~ 23748255 (+)

Expression


Co-expression Network