Gene
RNA
| Item | Value |
|---|---|
| gene id | G51589 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 3222759 ~ 3223865 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: homeobox protein Hox-C10a |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU58779 | True | 1107 | lncRNA | 0.38 | 1 | 3222759 | 3223865 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_03211734_03220047 | NXPE3 | coding | upstream | 1452 | 3211734 ~ 3222297 (+) |
| CI01000009_03202999_03207060 | MPC2, MPC2.S | coding | upstream | 15331 | 3202207 ~ 3208984 (+) |
| CI01000009_03164135_03169470 | GPR161 | coding | upstream | 52619 | 3162318 ~ 3170140 (+) |
| CI01000009_03145417_03159851 | F5 | coding | upstream | 62845 | 3145417 ~ 3159914 (+) |
| CI01000009_03123137_03137452 | CCDC80 | coding | upstream | 84448 | 3122116 ~ 3138311 (+) |
| CI01000009_03276572_03283625 | POU2F1B, POU2F1 | coding | downstream | 52707 | 3276572 ~ 3284006 (+) |
| CI01000009_03301176_03305406 | LAMP1 | coding | downstream | 77311 | 3301176 ~ 3305595 (+) |
| CI01000009_03313112_03329470 | MED14 | coding | downstream | 89247 | 3313112 ~ 3329510 (+) |
| CI01000009_03330968_03333405 | NA | coding | downstream | 106720 | 3330585 ~ 3333453 (+) |
| CI01000009_03335503_03355421 | NA | coding | downstream | 111638 | 3335503 ~ 3355426 (+) |
| G51610 | NA | non-coding | upstream | 73327 | 3119464 ~ 3149432 (+) |
| G51559 | NA | non-coding | upstream | 103739 | 3118793 ~ 3119020 (+) |
| G51558 | NA | non-coding | upstream | 104403 | 3117858 ~ 3118356 (+) |
| G51552 | NA | non-coding | upstream | 113847 | 3108463 ~ 3108912 (+) |
| G51581 | NA | non-coding | downstream | 37332 | 3261197 ~ 3262009 (+) |
| G51585 | NA | non-coding | downstream | 38471 | 3262336 ~ 3262959 (+) |
| G51569 | NA | non-coding | downstream | 63463 | 3287328 ~ 3290810 (+) |
| G51637 | NA | non-coding | downstream | 84661 | 3308526 ~ 3308759 (+) |
| G51638 | NA | non-coding | downstream | 85213 | 3309078 ~ 3309537 (+) |
| G51529 | NA | other | upstream | 160172 | 3062033 ~ 3062587 (+) |
| G51274 | NA | other | upstream | 872273 | 2255099 ~ 2350486 (+) |
| CI01000009_01897343_01919208 | PIKFYVE | other | upstream | 1321333 | 1897343 ~ 1919516 (+) |
| G51122 | NA | other | upstream | 1540793 | 1680146 ~ 1681966 (+) |
| G53388 | NA | other | downstream | 2298377 | 5522242 ~ 5540638 (+) |
| CI01000009_05931829_05943829 | KCNH3 | other | downstream | 2636437 | 5931718 ~ 5943899 (+) |
| G53651 | NA | other | downstream | 3021699 | 6245564 ~ 6248392 (+) |
| G56100 | NA | other | downstream | 5905435 | 9129300 ~ 9130286 (+) |
| CI01000009_09853929_09854476 | SAP18 | other | downstream | 6629494 | 9853929 ~ 9856587 (+) |
