G99352 (thumpd1)


Basic Information

Item Value
gene id G99352
gene name thumpd1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 264376 ~ 265137 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU133985
AGACAattaactgtttatttacagctgcaaaacaaagtaaacagcataaaaacaacaatccaGACTTCTGTAAACAAAATTGAGAGGAAATAAAACTACTTTTCGAAACACAAAATtacgatttaaaaaaaaaaaaaaaaaaaaacccactataattaaaaccaaaacacacagaaaactctGACTCAGATTCAGCGCACTCTCCCAGTCCATAGTGTTTTTAAAACTGGTCAGTCTTCTCCTATCTGTCACACTGTCAATCACTCTGGCTCCGCCTCTTTACTCCCGTTGCCCTGAGCAACAGCTTCAGTTTCCTTCTCACCATCAGTCCCACCCTCTTTTTCCTCTATATTTTGCCCTGCCTCCTTCTGCTCTGACCCCGCCTCCACCACCTCCTTCTTATGCTCAGGCCTCGCCTCGTCTGCAGTTGGCTCCGCCTTGCTCTTGGCTGCCCTTTGATTCTCATTGGCCGGCTCTCTGGTGACCTCCTGCAGGTTGTACTTCCTGAAGAGCGTGTAGTCACGGACGACGCTGACGCAGCACACCGACTTTATAATCTCTACGATGATGGTGAGCTCCGGATCCGTCAGATCCACCTTATTCTCCGGGTTCAGCTTCGCCACCAGacctgaggaagaggaggaggaggaggaggaggaggaggaggaagaggaggagggagag

Function

symbol description
thumpd1 Predicted to enable RNA binding activity. Predicted to be involved in tRNA modification. Is expressed in female organism. Orthologous to human THUMPD1 (THUMP domain containing 1).

NR:

description
THUMP domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133985 True 684 lncRNA 0.47 2 264376 265137

Neighbor

gene id symbol gene type direction distance location
LOC103028503 NA coding upstream 41155 216013 ~ 223221 (+)
LOC111193578 NA coding upstream 75777 187147 ~ 188599 (+)
LOC107197101 NA coding upstream 81727 177680 ~ 182649 (+)
LOC103033028 NA coding upstream 94672 162996 ~ 169704 (+)
LOC103027555 NA coding upstream 139227 98126 ~ 125149 (+)
rexo5 NA coding downstream 11516 276653 ~ 293379 (+)
gtf3c1 NA coding downstream 46529 311666 ~ 341737 (+)
LOC107197104 NA coding downstream 189735 454872 ~ 459776 (+)
LOC103026069 NA coding downstream 276808 541945 ~ 548280 (+)
LOC103043293 LOC108413567,LOC107572909 coding downstream 391531 656668 ~ 728123 (+)
G99373 NA non-coding upstream 14894 247940 ~ 249482 (+)
G99368 NA non-coding upstream 28583 234857 ~ 235793 (+)
G99367 NA non-coding upstream 30003 232927 ~ 234373 (+)
G99356 NA non-coding upstream 63803 197666 ~ 200573 (+)
G99345 NA non-coding upstream 170194 92045 ~ 94182 (+)
G99377 NA non-coding downstream 3304 268441 ~ 271128 (+)
G99382 NA non-coding downstream 20143 285280 ~ 286085 (+)
G99466 NA non-coding downstream 74962 340099 ~ 372617 (+)
G99478 NA non-coding downstream 116057 381194 ~ 423304 (+)
G99497 NA non-coding downstream 154069 419206 ~ 419712 (+)
LOC103031902 NA other upstream 227312 20991 ~ 37064 (+)
G99561 NA other downstream 209523 474660 ~ 482219 (+)
LOC103036139 NA other downstream 222337 487474 ~ 496376 (+)
LOC111193579 NA other downstream 268892 534029 ~ 540471 (+)
LOC111193492 NA other downstream 325046 590183 ~ 593200 (+)
ubl5 ubl5 other downstream 843339 1108476 ~ 1110592 (+)

Expression


Co-expression Network