Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC111193491 |
| gene name | NA |
| gene type | non-coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035908.1 |
| NCBI id | CM008311.1 |
| chromosome length | 31403898 |
| location | 530003 ~ 532087 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| id | name | namespace |
|---|---|---|
| GO:0008237 | metallopeptidase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU134301 | True | 387 | lncRNA | 0.40 | 3 | 530003 | 532087 |
| XR_002650555.1 | False | 277 | lncRNA | 0.44 | 3 | 530111 | 532085 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC107197104 | NA | coding | upstream | 70227 | 454872 ~ 459776 (+) |
| gtf3c1 | NA | coding | upstream | 188266 | 311666 ~ 341737 (+) |
| rexo5 | NA | coding | upstream | 236624 | 276653 ~ 293379 (+) |
| LOC103028503 | NA | coding | upstream | 306782 | 216013 ~ 223221 (+) |
| LOC111193578 | NA | coding | upstream | 341404 | 187147 ~ 188599 (+) |
| LOC103026069 | NA | coding | downstream | 9858 | 541945 ~ 548280 (+) |
| LOC103043293 | LOC108413567,LOC107572909 | coding | downstream | 124581 | 656668 ~ 728123 (+) |
| LOC103030233 | LOC108413570 | coding | downstream | 202994 | 735081 ~ 757324 (+) |
| mvb12a | NA | coding | downstream | 236922 | 769009 ~ 779862 (+) |
| LOC111193580 | NA | coding | downstream | 274927 | 807014 ~ 809445 (+) |
| G99568 | NA | non-coding | upstream | 895 | 501095 ~ 529108 (+) |
| G99478 | NA | non-coding | upstream | 106699 | 381194 ~ 423304 (+) |
| G99497 | NA | non-coding | upstream | 110291 | 419206 ~ 419712 (+) |
| G99466 | NA | non-coding | upstream | 157386 | 340099 ~ 372617 (+) |
| G99382 | NA | non-coding | upstream | 243918 | 285280 ~ 286085 (+) |
| G99582 | NA | non-coding | downstream | 37570 | 569657 ~ 575403 (+) |
| G99588 | NA | non-coding | downstream | 48265 | 580352 ~ 580737 (+) |
| G99596 | NA | non-coding | downstream | 74293 | 606380 ~ 612000 (+) |
| G99604 | NA | non-coding | downstream | 99418 | 631505 ~ 631834 (+) |
| LOC103024499 | NA | non-coding | downstream | 258019 | 790106 ~ 792100 (+) |
| LOC103036139 | NA | other | upstream | 33627 | 487474 ~ 496376 (+) |
| G99561 | NA | other | upstream | 47784 | 474660 ~ 482219 (+) |
| LOC103031902 | NA | other | upstream | 492939 | 20991 ~ 37064 (+) |
| LOC111193579 | NA | other | downstream | 1942 | 534029 ~ 540471 (+) |
| LOC111193492 | NA | other | downstream | 58096 | 590183 ~ 593200 (+) |
| ubl5 | ubl5 | other | downstream | 576389 | 1108476 ~ 1110592 (+) |
| G99710 | NA | other | downstream | 649340 | 1181427 ~ 1184269 (+) |
| LOC111193582 | NA | other | downstream | 764328 | 1296415 ~ 1298377 (+) |
