LOC111193579


Basic Information

Item Value
gene id LOC111193579
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 534029 ~ 540471 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU134317
gttttaactgtgtttttctctgtgtggacaagttttaactgtgtttttctctaGTTTTAACACagattttgatttgttttgcaGAACTGGAGCGTGAAAATGAGGAGCTGCAGAAGGAGCTGGCGAAGGTGCAGGAggagtataaaaataaaatagaggaAACAAAGACGAATGCTTTCACAGTGGAGTGGGATCCGGACACGGCGCACCCTCAGCTCCTCCTGACGAgtaaaggaaaagcagtaaAGGCTTCAGAATTCGCTCGTTTTGTTCCGGACAATCCGGAGCGCTTCAACGCGGCTTTGGCCGCTTTGGGAAAAAAAGGCTACGACTCCGGGAAGCCGTACTGGGAGGTGGACGTGGACATTCGGGCCTGTTTCGTGGTGGGCGTGGCCAAGAAATCAGCCAATAGAAAAGGCAGCTTAGCATACGGTCCCAAAAACGGCTACTGGGTTATCGTCAGGAGGAAGGATGGCCAGTACCACGCCCTCAATGACAAGACCACGCCCCTGAAACTGCCAGTCAAACCGACCGTGATCGGGGTTCTCCTGGACTTCAATAAGGGCAACGTGGTCTTCTTCAACGCCAAGACCAAGAAGCCGATCTACACCTACCACAACAACAAGTTCAGCGAGACACTGTTCCCGTACATCGAGACGTGCCACAGCCAAGGCAAGAACGAGCCCCCCATCGTCGTGTCCGACGCCGACTCCGTCCTGATGGACAACGTGAGCTAAGCTCTGCCCAGAATCTGCTCAGAAACCCAAAGCTCTGTAATacgtctctctgtgtttctaatCAGTGTATCTGGAGAAAATCCAGCTTTTAATGAATTAATCTCTGAAATAAAGTCAAGCAGTAAAACAAGC
>XM_022674983.1
atgagttttaactgtgtttttctctatGTGGAACTGGAGCGTGAAAATGAGGAGCTGCAGAAGGAGCTGGCGAAGGTGCAGGAggagtataaaaataaaatagaggaAACAAAGACGAATGCTTTCACAGTGGTTTCTCCAGAGTGGGATCCGGACACGGCGCACCCTCAGCTCCTCCTGACGAgtaaaggaaaagcagtaaAGGCTTCAGAATTCGCTCGTTTTGTTCCGGACAATCCGGAGCGCTTCAACGCGGCTTTGGCCGCTTTGGGAAAAAAAGGCTACGACTCCGGGAAGCCGTACTGGGAGGTGGACGTGGACATTCGGGCCTGTTTCGTGGTGGGCGTGGCCAAGAAATCAGCCAATAGAAAAGGCAGCTTAGCATACGGTCCCAAAAACGGCTACTGGGTTATCGTCAGGAGGAAGGATGGCCAGTACCACGCCCTCAATGACAAGACCACGCCCCTGAAACTGCCAGTCAAACCGACCGTGATCGGGGTTCTCCTGGACTTCAATAAGGGCAACGTGGTCTTCTTCAACGCCAAGACCAAGAAGCCGATCTACACCTACCACAACAACAAGTTCAGCGAGACACTGTTCCCGTACATCGAGACGTGCCACAGCCAAGGCAAGAACGAGCCCCCCATCGTCGTGTCCGACGCCGACTCCGTCCTGATGGACAACGTGAGCTAAGCTCTGCCCAGAATCTGCTCAGAAACCCAAAGCTCTGTAATacgtctctctgtgtttctaatCAGTGTATCTGGAGAAAATCCAGCTTTTAATGAATTAATCTCTGAAATAAAGTCAAGCAGTAAAACAAG

Function

GO:

id name namespace
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134317 True 869 lncRNA 0.49 2 535510 540471
XM_022674983.1 False 824 mRNA 0.51 3 534029 540470

Neighbor

gene id symbol gene type direction distance location
LOC107197104 NA coding upstream 74253 454872 ~ 459776 (+)
gtf3c1 NA coding upstream 192292 311666 ~ 341737 (+)
rexo5 NA coding upstream 240650 276653 ~ 293379 (+)
LOC103028503 NA coding upstream 310808 216013 ~ 223221 (+)
LOC111193578 NA coding upstream 345430 187147 ~ 188599 (+)
LOC103026069 NA coding downstream 1474 541945 ~ 548280 (+)
LOC103043293 LOC108413567,LOC107572909 coding downstream 116197 656668 ~ 728123 (+)
LOC103030233 LOC108413570 coding downstream 194610 735081 ~ 757324 (+)
mvb12a NA coding downstream 228538 769009 ~ 779862 (+)
LOC111193580 NA coding downstream 266543 807014 ~ 809445 (+)
LOC111193491 NA non-coding upstream 1942 530003 ~ 532087 (+)
G99568 NA non-coding upstream 4921 501095 ~ 529108 (+)
G99478 NA non-coding upstream 110725 381194 ~ 423304 (+)
G99497 NA non-coding upstream 114317 419206 ~ 419712 (+)
G99466 NA non-coding upstream 161412 340099 ~ 372617 (+)
G99582 NA non-coding downstream 29186 569657 ~ 575403 (+)
G99588 NA non-coding downstream 39881 580352 ~ 580737 (+)
G99596 NA non-coding downstream 65909 606380 ~ 612000 (+)
G99604 NA non-coding downstream 91034 631505 ~ 631834 (+)
LOC103024499 NA non-coding downstream 249635 790106 ~ 792100 (+)
LOC103036139 NA other upstream 37653 487474 ~ 496376 (+)
G99561 NA other upstream 51810 474660 ~ 482219 (+)
LOC103031902 NA other upstream 496965 20991 ~ 37064 (+)
LOC111193492 NA other downstream 49712 590183 ~ 593200 (+)
ubl5 ubl5 other downstream 568005 1108476 ~ 1110592 (+)
G99710 NA other downstream 640956 1181427 ~ 1184269 (+)
LOC111193582 NA other downstream 755944 1296415 ~ 1298377 (+)
LOC111193593 NA other downstream 1305020 1845491 ~ 1853019 (+)

Expression


Co-expression Network