G99582


Basic Information

Item Value
gene id G99582
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 569657 ~ 575403 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU134325
TGCATGTAATGATTTtattacaatacaaatacagagATTCCTAATCGTCCTCACCAATCAACCTACAAAAATGCactgttgtttttaatattccactcaacaacaaacacacaaaaaggtGAACCCTCATTTGCATACATCAGGCATAATTTACcctaatttacatatattgatTAGATAATGTGTCTTGAAACAAGgcataaaacagtttttaagaaCTATTTAAAAAGGGAAAACTATAGTGGGTAGTGTACATCCTGAAGAGAGACCGTTGACTGCTAGACAATGCCTGTACCATGCACTCCAGAACAATGGTAAGGCATCATTGGACTGGGAGAACCAGGATGGTCGTTTTGATGAATTTCCCAGCATTCATCAGCCTGACAATGTCTCAATCGTTCCCAGTGATGTCATGAACAAGAACCCTGACAAACATATTGATTCAgtatatttgtaaatcaagggtattaaatagGTATTTCTATCCTGCTACTGTTGGGGTAACCATCTCTACTGTCCATGGGAAGCTTACTAattgattttggagcattgctgtaaggattttaTTGCAAACATGAAAGTTCAGGATGTTGAAGACAGGATATTGGTTGGTCACCAtgccaactcatcccaaacttctCCCATTAAAAGTAGCAGCGTTCAGTCATTTTAGAGAACATAGTTGCACTGCTCCACAGTTCAATACTTGGGGCTTTTCTGCAGTATGAATCCTCTGGTGGACCTTCAGTTTTGACGATCTCGCGAATGTCTTCCCACACTCTGGAATCATGCACTGGAAAGGTCTTTCTCCAGTATGTATTCTCTGGTGGACCTTTAGCTCTGATGCTATGTTGAACTTCTTTCCACACACAGTGCAGTGGTGCGGCCTCTGTCCGGTATGTATTCGCTGGTGCCTGTTAAGTGTAGAGGGATCAGAGAAGCTTTTTCCGCAAGTGAGACAAACGAGAGGCTTCTCTCCAGTATGTATTCTCTGGTGAATCTTCACCTTTGAGGAGTGGGTGAAGTGCTTCCCACACACGTCGCAAGAGTATGGCTTTTCTCCAGTATGTACTCTCAGGTGGATCTTCAGGTGTGACTGTTGAGTGAATTGTTTTCCACACTGAGGACATCCGTAGGGCTTTTCTCCAGTATGTATTCTCTGGTGGATCTTCAATGCTGATGAAGTCATGAACTGTCGTCCACACagagtgcagtggtgtgggCTCTGCCCGGTATATATTGTTTGGTGCCTATCAAGGGTGAAGAGATCAGATAAGCTTCTTTCGCATATGAGACAGTCAAGAGTCTtctctccagtatgaattcatTGGCATTCCTTCAGGTTTGACCACGTTAAGAACTTCTTTCCACAGAGAGGATTCTTGTCGCTGTGAAGCTTTGAGGGTTTGAGGTGGTCTGATTTTGTTGGGAAGCCATCGCTGAGACTCTGATGAGGTGAAGGACTGGCTGAGTTTCGTCTGCTGTTGTCGTCATCTGGTTCTCCTTTAGACACACATCTGATATTATTGGACATTAGTTGAGGCTCATCTGAAAGAGTAATATTCTTCTCATCTTCTTCTTCGGTGACAGCGCTGCTGTTCTGTTGCTCTTCTACTTTGATATGTCCGTCCATCTCCAGCATGTTCCTGCAGTCCACCAGCTTTACTGAACAAGTCAATAACTGAGTCTGAAACATCTGCTGAACGTCATCCTCCACCACCAAGAGATTCCCTTCTGCTAGAGGAGGTTCTTCTTTGTAAAGAGTTGATAAATTCTCTGGCACCGACAGACTGGGATCTTCATGGTCTTCATAGTCTTCATCGTCTGGTTCAGTTTTACAGACCACAAGCATTACCGGTTCCTCCTCCATCTTGACTAAAGTTTGTGAGCTTGCAGTCACGTTTTCGTCGATCTGTAACGGTACAGTGTCTGGATCCCATTTAAAGCTAAAGGACGACGTGCCGCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134325 True 1968 lncRNA 0.43 2 569657 575403

Neighbor

gene id symbol gene type direction distance location
LOC103026069 NA coding upstream 21377 541945 ~ 548280 (+)
LOC107197104 NA coding upstream 109881 454872 ~ 459776 (+)
gtf3c1 NA coding upstream 227920 311666 ~ 341737 (+)
rexo5 NA coding upstream 276278 276653 ~ 293379 (+)
LOC103028503 NA coding upstream 346436 216013 ~ 223221 (+)
LOC103043293 LOC108413567,LOC107572909 coding downstream 81265 656668 ~ 728123 (+)
LOC103030233 LOC108413570 coding downstream 159678 735081 ~ 757324 (+)
mvb12a NA coding downstream 193606 769009 ~ 779862 (+)
LOC111193580 NA coding downstream 231611 807014 ~ 809445 (+)
LOC103028614 LOC108415945,LOC106564086 coding downstream 239057 814460 ~ 829481 (+)
LOC111193491 NA non-coding upstream 37570 530003 ~ 532087 (+)
G99568 NA non-coding upstream 40549 501095 ~ 529108 (+)
G99478 NA non-coding upstream 146353 381194 ~ 423304 (+)
G99497 NA non-coding upstream 149945 419206 ~ 419712 (+)
G99466 NA non-coding upstream 197040 340099 ~ 372617 (+)
G99588 NA non-coding downstream 4949 580352 ~ 580737 (+)
G99596 NA non-coding downstream 30977 606380 ~ 612000 (+)
G99604 NA non-coding downstream 56102 631505 ~ 631834 (+)
LOC103024499 NA non-coding downstream 214703 790106 ~ 792100 (+)
G99623 NA non-coding downstream 272796 848199 ~ 851469 (+)
LOC111193579 NA other upstream 29186 534029 ~ 540471 (+)
LOC103036139 NA other upstream 73281 487474 ~ 496376 (+)
G99561 NA other upstream 87438 474660 ~ 482219 (+)
LOC103031902 NA other upstream 532593 20991 ~ 37064 (+)
LOC111193492 NA other downstream 14780 590183 ~ 593200 (+)
ubl5 ubl5 other downstream 533073 1108476 ~ 1110592 (+)
G99710 NA other downstream 606024 1181427 ~ 1184269 (+)
LOC111193582 NA other downstream 721012 1296415 ~ 1298377 (+)
LOC111193593 NA other downstream 1270088 1845491 ~ 1853019 (+)

Expression


Co-expression Network