LOC111193492


Basic Information

Item Value
gene id LOC111193492
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 590183 ~ 593200 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU134332
TCTGCTGTTCCTACAGCTCTAAACTGCAGAGTGGTTCCAGGCAGTCTGAAGCAGATTGACGCCGGGAACGGTCAGGTGTTTGGAGTGAACTCAGCCGATGAGATCTACACCCTCTACAGTGGGGTATGGACAAAAGTTCCTGGATCTCTGAAGCACGTCAGCGTGGGACCTGCTGGAGTTTGGGGAGTCAGTGCAGGAGATTACATCCTAAACCTTCAGAGAGGGGATTGGGTTGTTGTCCGAGGCCTCCTGAAGCAGGTGGATGCCGGAGGATCGGTCTTCCCAGCCGGAGTCAACTCAAATGATGACATCTACTGCCTTCCTGCTGAAGGTAGCTGGATAAATATCCAGGGAAAGCTGAAGTACTACAGCTGTGGGTCTTACAGCTGCTGGGGGGTGAACTCTGCAGACAATATCTACATTATGAAGGGTGTGACCCCAACCAAGTGTGGTGGCTCTTTACAGTGGGAGCAGatagatggagctctttccaTGATTGAAGTTTCAACTGATGGAAAAGTCTATGGAGTCAATTCCAATGGAGATCTCTTTGAAAGggaaGGTGTTTCCTCAATCAATCCTGCTGGCACTAAGTGGCGCCAACTCCCATTGTACCAGAGAATAAAGCACGTTTCCTATGATGGCGGACACCTGTGGCTCATTACCTTAGATAACAGCATCTTGGATTGTACTGATGATCTTAATTAGcaattaagttgtttttttactcGTTCCCTGCTACATTGGAAATGTGGTCCCCCTCAGTGTAAACCACAACTTAAATAAAGATGAATGAGTGATGATGAGTCATTGATATTTAGACCTTACGTTGCCTGAAAATAAAGAGATATAATAATTTCTTCTCTGATAAACTGACAATTGAT
>XM_022674425.1
ATAACTCTCTAAAATATGAAGTCAGTGAAGTGTTAGTTCAGGGCTGACCGACACCATGAGGACTCTGCTGACTCTCTGCCTGATCATGAACCTCTGGATCACCTCTCTGGCTCTAAACTGCAGAGTGGTTCCAGGCAGTCTGAAGCAGATTGACGCCGGGAACGGTCAGGTGTTTGGAGTGAACTCAGCCGATGAGATCTACACCCTCTACAGTGGGGTATGGACAAAAGTTCCTGGATCTCTGAAGCACGTCAGCGTGGGACCTGCTGGAGTTTGGGGAGTCAGTGCAGGAGATTACATCCTAAACCTTCAGAGAGGGGATTGGGTTGTTGTCCGAGGCCTCCTGAAGCAGGTGGATGCCGGAGGATCGGTCTTCCCAGCCGGAGTCAACTCAAATGATGACATCTACTGCCTTCCTGCTGAAGGTAGCTGGATAAATATCCAGGGAAAGCTGAAGTACTACAGCTGTGGGTCTTACAGCTGCTGGGGGGTGAACTCTGCAGACAATATCTACATTATGAAGGGTGTGACCCCAACCAAGTGTGGTGGCTCTTTACAGTGGGAGCAGatagatggagctctttccaTGATTGAAGTTTCAACTGATGGAAAAGTCTATGGAGTCAATTCCAATGGAGATCTCTTTGAAAGggaaGGTGTTTCCTCAATCAATCCTGCTGGCACTAAGTGGCGCCAACTCCCATTGTACCAGAGAATAAAGCACGTTTCCTATGATGGCGGACACCTGTGGCTCATTACCTTAGATAACAGCATCTTGGATTGTACTGATGATCTTAATTAGcaattaagttgtttttttactcGTTCCCTGCTACATTGGAAATGTGGTCCCCCTCAGTGTAAACCACAACTTAAATAAAGATGAATGAGTGATGATGAGTCATTGATATTTAGACCTTACGTTGCCTGAAAATAAAGAGATATAATAATTTCTTCTCTGATAAACTGACAATTGATTATGCCTTGATTATTAAATCTGTAAACACATTGAAAAGTGTTATAGAA

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU134332 False 884 TUCP 0.46 4 590830 593152
XM_022674425.1 True 1026 mRNA 0.45 5 590183 593200

Neighbor

gene id symbol gene type direction distance location
LOC103026069 NA coding upstream 41903 541945 ~ 548280 (+)
LOC107197104 NA coding upstream 130407 454872 ~ 459776 (+)
gtf3c1 NA coding upstream 248446 311666 ~ 341737 (+)
rexo5 NA coding upstream 296804 276653 ~ 293379 (+)
LOC103028503 NA coding upstream 366962 216013 ~ 223221 (+)
LOC103043293 LOC108413567,LOC107572909 coding downstream 63468 656668 ~ 728123 (+)
LOC103030233 LOC108413570 coding downstream 141881 735081 ~ 757324 (+)
mvb12a NA coding downstream 175809 769009 ~ 779862 (+)
LOC111193580 NA coding downstream 213814 807014 ~ 809445 (+)
LOC103028614 LOC108415945,LOC106564086 coding downstream 221260 814460 ~ 829481 (+)
G99588 NA non-coding upstream 9446 580352 ~ 580737 (+)
G99582 NA non-coding upstream 14780 569657 ~ 575403 (+)
LOC111193491 NA non-coding upstream 58096 530003 ~ 532087 (+)
G99568 NA non-coding upstream 61075 501095 ~ 529108 (+)
G99478 NA non-coding upstream 166879 381194 ~ 423304 (+)
G99596 NA non-coding downstream 13180 606380 ~ 612000 (+)
G99604 NA non-coding downstream 38305 631505 ~ 631834 (+)
LOC103024499 NA non-coding downstream 196906 790106 ~ 792100 (+)
G99623 NA non-coding downstream 254999 848199 ~ 851469 (+)
G99642 NA non-coding downstream 303219 896419 ~ 896789 (+)
LOC111193579 NA other upstream 49712 534029 ~ 540471 (+)
LOC103036139 NA other upstream 93807 487474 ~ 496376 (+)
G99561 NA other upstream 107964 474660 ~ 482219 (+)
LOC103031902 NA other upstream 553119 20991 ~ 37064 (+)
ubl5 ubl5 other downstream 515276 1108476 ~ 1110592 (+)
G99710 NA other downstream 588227 1181427 ~ 1184269 (+)
LOC111193582 NA other downstream 703215 1296415 ~ 1298377 (+)
LOC111193593 NA other downstream 1252291 1845491 ~ 1853019 (+)
LOC103047668 NA other downstream 1292028 1885228 ~ 1889237 (+)

Expression


Co-expression Network