ubl5 (ubl5)


Basic Information

Item Value
gene id ubl5
gene name ubl5
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 1108476 ~ 1110592 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU134475
gcttgtgattggctgggctCTTGGCGTGTGTTAGTGAACAGTGCTCGGTGTGTGATCGGTGGAGGAGCGTGATCGCGTTTCTGGGGAAAAACAGCGAAttcgGAAGAAGCTCAGAGATGATTGAGGTGGTGTGTAACGACCGGCTGGGTAAAAAGGTCCGGGTCAAGTGCAACTCTGAGGACACGATTGGAGATCTGAAGAAGCTGATCGCTGCTCAGACCGGCACACGATGGGACAAAATCGTTCTGAAGAAATGgtatACAATATTCAAGGATCATGTGACACTGGGAGACTATGAGATCCATGATGGGATGAACCTGGAGCTTTATTACCAGTAGAgggcagcacacacacacacacacacacacacacactctaccagTAAATTGAGTATTGTTGATTACATCATGCAAGACATTTTTGTTAAGTtcagttgttttgttttgatatttgagaataaaattatttatatacattaaaaa
>XM_007238338.3
GCGTTAGGCgcttgtgattggctgggctCTTGGCGTGTGTTAGTGAACAGTGCTCGGTGTGTGATCGGTGGAGGAGCGTGATCGCGTTTCTGGGGAAAAACAGCGAAttcgGAAGAAGCTCAGAGATGATTGAGGTGGTGTGTAACGACCGGCTGGGTAAAAAGGTCCGGGTCAAGTGCAACTCTGAGGACACGATTGGAGATCTGAAGAAGCTGATCGCTGCTCAGACCGGCACACGATGGGACAAAATCGTTCTGAAGAAATGgtatACAATATTCAAGGATCATGTGACACTGGGAGACTATGAGATCCATGATGGGATGAACCTGGAGCTTTATTACCAGTAGAgggcagcacacacacacacacacacacacacacactctaccagTAAATTGAGTATTGTTGATTACATCATGCAAGACATTTTTGTTAAGTtcagttgttttgttttgatatttgagaataaaattatttatatacattaaaaa

Function

symbol description
ubl5 Predicted to enable protein tag. Involved in positive regulation of protein targeting to mitochondrion. Located in cytoplasm.

NR:

description
ubiquitin-like protein 5 isoform X1

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K13113 UBL5, HUB1; ubiquitin-like protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
TU134475 False 482 TUCP 0.44 5 1108485 1110592
XM_007238338.3 True 491 mRNA 0.44 5 1108476 1110592

Neighbor

gene id symbol gene type direction distance location
LOC103023562 NA coding upstream 140363 961275 ~ 968113 (+)
LOC103026766 NA coding upstream 156862 941924 ~ 951614 (+)
LOC103027056 LOC108413120 coding upstream 174275 904230 ~ 934201 (+)
LOC103027665 LOC108413281,LOC108412240 coding upstream 212676 889210 ~ 895800 (+)
LOC103027992 LOC108413169 coding upstream 223941 855966 ~ 884535 (+)
LOC103046652 NA coding downstream 41019 1151611 ~ 1171823 (+)
LOC111193496 NA coding downstream 108165 1218757 ~ 1228783 (+)
LOC103028492 NA coding downstream 122498 1233090 ~ 1236197 (+)
LOC103027248 LOC103027248 coding downstream 129571 1240163 ~ 1243893 (+)
LOC103027651 NA coding downstream 137975 1248567 ~ 1253895 (+)
G99674 pin1,LOC107571794,LOC107727173,LOC107685032,LOC107662743 non-coding upstream 980 1039796 ~ 1107496 (+)
G99677 NA non-coding upstream 4767 1051900 ~ 1103709 (+)
G99690 LOC108412243 non-coding upstream 22679 1081118 ~ 1085797 (+)
G99682 NA non-coding upstream 46295 1061716 ~ 1062181 (+)
G99671 NA non-coding upstream 80252 1027849 ~ 1028224 (+)
LOC103027978 NA non-coding downstream 146452 1257044 ~ 1289874 (+)
G99726 NA non-coding downstream 151150 1261742 ~ 1263514 (+)
G99734 NA non-coding downstream 222678 1333270 ~ 1333914 (+)
G99736 NA non-coding downstream 246500 1357092 ~ 1358954 (+)
G99899 NA non-coding downstream 266426 1377018 ~ 1419192 (+)
LOC111193492 NA other upstream 515276 590183 ~ 593200 (+)
LOC111193579 NA other upstream 568005 534029 ~ 540471 (+)
LOC103036139 NA other upstream 612100 487474 ~ 496376 (+)
G99561 NA other upstream 626257 474660 ~ 482219 (+)
LOC103031902 NA other upstream 1071412 20991 ~ 37064 (+)
G99710 NA other downstream 70835 1181427 ~ 1184269 (+)
LOC111193582 NA other downstream 185823 1296415 ~ 1298377 (+)
LOC111193593 NA other downstream 734899 1845491 ~ 1853019 (+)
LOC103047668 NA other downstream 774636 1885228 ~ 1889237 (+)
LOC103038569 NA other downstream 901437 2012029 ~ 2016263 (+)

Expression


Co-expression Network