LOC103027978


Basic Information

Item Value
gene id LOC103027978
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 1257044 ~ 1289874 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU134527
AGAAAAACTCCGCTCTCTCAGCTCGACTTTTCTTCTGGAATTGGGGCTTGCGGACAAAGTAAAAGAAATGggacaatttaaaaaagaaatacaaaGGGACAAAGCAACATTCACCACTCAGCTGGGACTACAGATATCGCTTTGCTtccaaagGAAGTAAAGACACTGCTGGGATCTGTTTGCTGGTGAAGATGGGAGAGATTCTTCAGCAGGCTGAAGACTCTGGGGAAAAATCCAACCTATTGACTAAATCTACAGGAATCACAGAAATGGATGataaaaaagAGCTGAGGATTGCAATGCTGGGAAAAACAGGAGTCGGCAAGAGTTCTGTTGGGAATGCAATTCTTGGGGAAGAGAAAGTGTTTAAAGCAGAATGTTCACTAAAGAGTGTGACAGAATTgtcaaagagaagaaaaagtgatcaataaaaaaagagtagttgTAATAGACACACCTGGAATTTTTGATACTGACAGATCAGAGGAAGAAGTTAGGGATGAGATAATATCCAGTCTGGTAGAGTGCACACCCGGTCCTCAtatctttattttagtgttaaagATAGAAAGACACACCAAGGAAAACCAGCAAACACTAGAAAAATTGCTGGAGTATTTCACTGATAGTATTTTCCCTCATATGATCCTGCTCTTCACACACGGGGAGGACCTtgacaaaaacatcaaaatcaGTGAACTTAATTAAGcagagtgatgagggaaaataCAGCCTGAAAGATCTGGCTGAGAAATGTGGAAACAGAGTTCATGTAATCGACAACAAACACTGGAACACTGAGAGCAGAGTTTCAGCTACATTAGCTGCTCTAAAGGGACTAAACATTCCTGAACAGGCTCTGCAAGACTTTAAAGATAAAATTACCTCAACACCCGCTGATAAAACCCCCTTGTTTAATGAGCTGTCAGATCAAGATGGCAATGTAAAAACAGAATTTCAATCTGAATCTGAAGAAAACCGAAATAACGAGTTTCAGCTCACCCAGCTGATGAAGAGCGTAAAAAACATCATGAGGCAAAATAATGGACAACCGTACAGTAACAAAACTTTAGGGGAGATTGAAAAAGCCATTAATGTAGAAGCAGAAACTGTCTTAAAGGAGATGGGTgctcagagagagacagacaacatgGTGGAGATCAAGagaagagcaaaagagagagtgaaaaataaattacagagaCAGTTATCTGGTGTAGCAGTGGGAATATTTATGGGAGCTTTTCTGGGG
>XR_002650556.1
gcaatctaaagcttactgaaaataaaaccaCACCCATTTATAAAGAGCttattttcatgaaaaaaaaaacaatttcggTTTAATCATCTGCTTGTTTTTCAGGGGACAAAGCAACATTCACCACTCAGCTGGGACTACAGATATCGCTTTGCTtccaaagGAAGTAAAGACACTGCTGGGATCTGTTTGCTGGTGAAGATGGGAGAGATTCTTCAGCAGGCTGAAGACTCTGGGGAAAAATCCAACCTATTGACTAAATCTACAGGAATCACAGAAATGGATGataaaaaagAGCTGAGGATTGCAATGCTGGGAAAAACAGGAGTCGGCAAGAGTTCTGTTGGGAATGCAATTCTTGGGGAAGAGAAAGTGTTTAAAGCAGAATGTTCACTAAAGAGTGTGACAGAATTgtcaaagagaagaaaaagtgatcaataaaaaaagagtagttgTAATAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134527 True 1252 lncRNA 0.40 7 1257044 1289874
XR_002650556.1 False 459 lncRNA 0.38 4 1264343 1266720

Neighbor

gene id symbol gene type direction distance location
LOC103027651 NA coding upstream 3149 1248567 ~ 1253895 (+)
LOC103027248 LOC103027248 coding upstream 13151 1240163 ~ 1243893 (+)
LOC103028492 NA coding upstream 20847 1233090 ~ 1236197 (+)
LOC111193496 NA coding upstream 28261 1218757 ~ 1228783 (+)
LOC103046652 NA coding upstream 85221 1151611 ~ 1171823 (+)
LOC103031973 dnm2,LOC105929264 coding downstream 13279 1303153 ~ 1326104 (+)
LOC103026147 NA coding downstream 65833 1355707 ~ 1366818 (+)
LOC111193583 NA coding downstream 223279 1513153 ~ 1518775 (+)
LOC111193585 NA coding downstream 240432 1530306 ~ 1534604 (+)
LOC111193586 NA coding downstream 246463 1536337 ~ 1539546 (+)
G99674 pin1,LOC107571794,LOC107727173,LOC107685032,LOC107662743 non-coding upstream 149548 1039796 ~ 1107496 (+)
G99677 NA non-coding upstream 153335 1051900 ~ 1103709 (+)
G99690 LOC108412243 non-coding upstream 171247 1081118 ~ 1085797 (+)
G99682 NA non-coding upstream 194863 1061716 ~ 1062181 (+)
G99671 NA non-coding upstream 228820 1027849 ~ 1028224 (+)
G99734 NA non-coding downstream 43396 1333270 ~ 1333914 (+)
G99736 NA non-coding downstream 67218 1357092 ~ 1358954 (+)
G99899 NA non-coding downstream 87144 1377018 ~ 1419192 (+)
G99923 NA non-coding downstream 199859 1489733 ~ 1494616 (+)
G99921 NA non-coding downstream 201465 1491339 ~ 1491805 (+)
G99710 NA other upstream 72775 1181427 ~ 1184269 (+)
ubl5 ubl5 other upstream 146452 1108476 ~ 1110592 (+)
LOC111193492 NA other upstream 663844 590183 ~ 593200 (+)
LOC111193579 NA other upstream 716573 534029 ~ 540471 (+)
LOC103036139 NA other upstream 760668 487474 ~ 496376 (+)
LOC111193582 NA other downstream 6541 1296415 ~ 1298377 (+)
LOC111193593 NA other downstream 555617 1845491 ~ 1853019 (+)
LOC103047668 NA other downstream 595354 1885228 ~ 1889237 (+)
LOC103038569 NA other downstream 722155 2012029 ~ 2016263 (+)
LOC103031617 NA other downstream 743021 2032895 ~ 2038742 (+)

Expression


Co-expression Network