LOC111193582


Basic Information

Item Value
gene id LOC111193582
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 1296415 ~ 1298377 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU134552
AGAATGGACCATGGAGGAAAGTTCAGAACCAAACCAGGTCcaagaaaatATGCCTGTGAGCTCACACTGGACCCAAACACAGTACACAAGAACATCTCCCTTTCTGAGGACTGCAGAAAAGCATGCCGTGTAAAGGAAGGTCGGCTACATCCAGAGCACCCAGAGCGATTTGAAGGCCACCCTCATGCTCAGGTTCTGTGCAGGGAGAGTCTGACTGGACGATGTTACTGGGAGGCAGAGTGGGAAGAGTGGTGTGAAATTGCTGTAGCATATAAAGGAAttggaagaaaagagaaaaatcctGATTCATGTGGATTTGGAAGCAATGCAATGTCCTGGAGCTTGAACTGCTCCAAATATGGTTACTCTGCAAGTCACAACAATAAGAGCACTGAAATACGCATTCCAACTTCCCAGAGAGTGGGAGTGTACCTGGATTGGCCAGGTGGCTCTTTGTCCTTCTACAGCATCCATGAACATCACAAGCTGAAAGAAATACACACTTTTCGCTCCAGGTTTACTGAGCCTCTCTTTGCAGGCTTTGg
>XM_022674990.1
ACTGCTGACAACAGTTCTTAGCTCTGATTCTTCACCTTTGAGAGAACTGGACATGAGTAACAATAACCTCCAGGATTCAGGAGTTATGCCACTTTTGGATGGACTAAAGAGTCATTACTGTAAACTGGAGATTCTCAGtctgtgctgctgtaGTCTCACCCTGGAGTGCTGCGAAACTTTAGCATCAGCTCTGAGTTCAGATTCTTCAGTTCTGAAGGAGCTGGATCTAAGTTACAATGAGCTGAAGAATAGAGGAGTGCAGCTACTTTCTGAGGGGCTAAAGAAACCACACTGTAAACTAGCAATACTGAGATTATCCCTGTGCATGATCACAGACAAAGGCTTTTCCTATCTGGCTTCAGCACTGATTTCAAACCCCTCTCACTTGAAAGAGCTGGATTTGAGATATAATTACCCAGGAGAATCTGGAAAGGAACTGCTTTCTGCCAGACAAGAGGATTCACAATGCAGCCTAAAAAGGCTCAGAATGGACCATGGAGGAAAGTTCAGAACCAAACCAGGTCcaagaaaatATGCCTGTGAGCTCACACTGGACCCAAACACAGTACACAAGAACATCTCCCTTTCTGAGGACTGCAGAAAAGCATGCCGTGTAAAGGAAGGTCGGCTACATCCAGAGCACCCAGAGCGATTTGAAGGCCACCCTCATGCTCAGGTTCTGTGCAGGGAGAGTCTGACTGGACGATGTTACTGGGAGGCAGAGTGGGAAGAGTGGTGTGAAATTGCTGTAGCATATAAAGGAAttggaagaaaagagaaaaatcctGATTCATGTGGATTTGGAAGCAATGCAATGTCCTGGAGCTTGAACTGCTCCAAATATGGTTACTCTGCAAGTCACAACAATAAGAGCACTGAAATACGCATTCCAACTTCCCAGAGAGTGGGAGTGTACCTGGATTGGCCAGGTGGCTCTTTGTCCTTCTACAGCATCCATGAACATCACAAGCTGAAAGAAATACACACTTTTCGCTCCAGGTTTACTGAGCCTCTCTTTGCAGGCTTTGgggttttataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134552 False 545 TUCP 0.47 2 1297254 1298367
XM_022674990.1 True 1039 mRNA 0.45 5 1296415 1298377

Neighbor

gene id symbol gene type direction distance location
LOC103027651 NA coding upstream 42520 1248567 ~ 1253895 (+)
LOC103027248 LOC103027248 coding upstream 52522 1240163 ~ 1243893 (+)
LOC103028492 NA coding upstream 60218 1233090 ~ 1236197 (+)
LOC111193496 NA coding upstream 67632 1218757 ~ 1228783 (+)
LOC103046652 NA coding upstream 124592 1151611 ~ 1171823 (+)
LOC103031973 dnm2,LOC105929264 coding downstream 4776 1303153 ~ 1326104 (+)
LOC103026147 NA coding downstream 57330 1355707 ~ 1366818 (+)
LOC111193583 NA coding downstream 214776 1513153 ~ 1518775 (+)
LOC111193585 NA coding downstream 231929 1530306 ~ 1534604 (+)
LOC111193586 NA coding downstream 237960 1536337 ~ 1539546 (+)
LOC103027978 NA non-coding upstream 6541 1257044 ~ 1289874 (+)
G99726 NA non-coding upstream 32901 1261742 ~ 1263514 (+)
G99674 pin1,LOC107571794,LOC107727173,LOC107685032,LOC107662743 non-coding upstream 188919 1039796 ~ 1107496 (+)
G99677 NA non-coding upstream 192706 1051900 ~ 1103709 (+)
G99690 LOC108412243 non-coding upstream 210618 1081118 ~ 1085797 (+)
G99734 NA non-coding downstream 34893 1333270 ~ 1333914 (+)
G99736 NA non-coding downstream 58715 1357092 ~ 1358954 (+)
G99899 NA non-coding downstream 78641 1377018 ~ 1419192 (+)
G99923 NA non-coding downstream 191356 1489733 ~ 1494616 (+)
G99921 NA non-coding downstream 192962 1491339 ~ 1491805 (+)
G99710 NA other upstream 112146 1181427 ~ 1184269 (+)
ubl5 ubl5 other upstream 185823 1108476 ~ 1110592 (+)
LOC111193492 NA other upstream 703215 590183 ~ 593200 (+)
LOC111193579 NA other upstream 755944 534029 ~ 540471 (+)
LOC103036139 NA other upstream 800039 487474 ~ 496376 (+)
LOC111193593 NA other downstream 547114 1845491 ~ 1853019 (+)
LOC103047668 NA other downstream 586851 1885228 ~ 1889237 (+)
LOC103038569 NA other downstream 713652 2012029 ~ 2016263 (+)
LOC103031617 NA other downstream 734518 2032895 ~ 2038742 (+)
LOC103031088 NA other downstream 741717 2040094 ~ 2051858 (+)

Expression


Co-expression Network