Gene
RNA
| Item | Value |
|---|---|
| gene id | G51569 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 3287328 ~ 3290810 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU58759 | True | 3483 | lncRNA | 0.37 | 1 | 3287328 | 3290810 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_03276572_03283625 | POU2F1B, POU2F1 | coding | upstream | 3322 | 3276572 ~ 3284006 (+) |
| CI01000009_03211734_03220047 | NXPE3 | coding | upstream | 66021 | 3211734 ~ 3222297 (+) |
| CI01000009_03202999_03207060 | MPC2, MPC2.S | coding | upstream | 79900 | 3202207 ~ 3208984 (+) |
| CI01000009_03164135_03169470 | GPR161 | coding | upstream | 117188 | 3162318 ~ 3170140 (+) |
| CI01000009_03145417_03159851 | F5 | coding | upstream | 127414 | 3145417 ~ 3159914 (+) |
| CI01000009_03301176_03305406 | LAMP1 | coding | downstream | 10366 | 3301176 ~ 3305595 (+) |
| CI01000009_03313112_03329470 | MED14 | coding | downstream | 22302 | 3313112 ~ 3329510 (+) |
| CI01000009_03330968_03333405 | NA | coding | downstream | 39775 | 3330585 ~ 3333453 (+) |
| CI01000009_03335503_03355421 | NA | coding | downstream | 44693 | 3335503 ~ 3355426 (+) |
| CI01000009_03466999_03473248 | SHOX, MOG-12 | coding | downstream | 176043 | 3466853 ~ 3473414 (+) |
| G51585 | NA | non-coding | upstream | 24369 | 3262336 ~ 3262959 (+) |
| G51581 | NA | non-coding | upstream | 25319 | 3261197 ~ 3262009 (+) |
| G51589 | NA | non-coding | upstream | 63463 | 3222759 ~ 3223865 (+) |
| G51610 | NA | non-coding | upstream | 137896 | 3119464 ~ 3149432 (+) |
| G51637 | NA | non-coding | downstream | 17716 | 3308526 ~ 3308759 (+) |
| G51638 | NA | non-coding | downstream | 18268 | 3309078 ~ 3309537 (+) |
| G51639 | NA | non-coding | downstream | 20144 | 3310954 ~ 3311469 (+) |
| G51659 | NA | non-coding | downstream | 136756 | 3427566 ~ 3427773 (+) |
| G51673 | NA | non-coding | downstream | 304494 | 3595304 ~ 3599012 (+) |
| G51529 | NA | other | upstream | 224741 | 3062033 ~ 3062587 (+) |
| G51274 | NA | other | upstream | 936842 | 2255099 ~ 2350486 (+) |
| CI01000009_01897343_01919208 | PIKFYVE | other | upstream | 1385902 | 1897343 ~ 1919516 (+) |
| G51122 | NA | other | upstream | 1605362 | 1680146 ~ 1681966 (+) |
| G53388 | NA | other | downstream | 2231432 | 5522242 ~ 5540638 (+) |
| CI01000009_05931829_05943829 | KCNH3 | other | downstream | 2569492 | 5931718 ~ 5943899 (+) |
| G53651 | NA | other | downstream | 2954754 | 6245564 ~ 6248392 (+) |
| G56100 | NA | other | downstream | 5838490 | 9129300 ~ 9130286 (+) |
| CI01000009_09853929_09854476 | SAP18 | other | downstream | 6562549 | 9853929 ~ 9856587 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | G204402 | NA | non-coding | CI01000048 | null | 270974 ~ 271195 (+) |
| rainbow trout (Oncorhynchus mykiss) | LOC110520558 | LOC106586756 | misc | NC_048567.1 | CM023221.2 | 73661996 ~ 73697362 (-) |
| eurasian perch (Perca fluviatilis) | G125825 | NA | non-coding | NC_053123.1 | CM020920.1 | 20958707 ~ 20959962 (+) |
| striped catfish (Pangasianodon hypophthalmus) | G283307 | NA | non-coding | NC_047612.1 | CM018558.1 | 16042362 ~ 16042579 (-) |
| bowfin (Amia calva) | G70054 | NA | non-coding | CM030128.1 | CM030128.1 | 13694815 ~ 13696871 (+) |
