G52606


Basic Information

Item Value
gene id G52606
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3300949 ~ 3302661 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU59928
GTAATGTTGTCCTCAGTCAGCTTGAGAGCTGCAAAGTCTGGCGTGCAGGATCCAGAGACTTTAATCAGGTTTGGATGCAGGTTCAAGACCTCCTGGACAGTCTTGCCATGAGAGCTTGAAGTAAAGCTTATGTTGAGTTGCAGGCCCATCCGTGCCAAGAGACACAAAGTGTCAGTGCTGTTGGTGACATTGTAGTTGCCCCGCTCAGGGGGGCCGGGGGTTGCAGGAGAGGCCGGAGGAGAGCTGGTTTCAGGGGCGACCACGGTGGGCGATACATCAGTGGTCAAAGTCTGATGTATAGTTAGAGCTGATAAGCGCAGTAGGTCAGATTTGTTTAGTTTCTCATAACCGCAGTAGGAAACGCCACCGTCATGTCATGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU59928 True 380 lncRNA 0.52 3 3300949 3302661

Neighbor

gene id symbol gene type direction distance location
CI01000009_03292206_03295043 NA coding downstream 5906 3292206 ~ 3295043 (-)
CI01000009_03264437_03267242 NA coding downstream 33707 3264437 ~ 3267242 (-)
CI01000009_03261739_03262843 NA coding downstream 38106 3261038 ~ 3262843 (-)
CI01000009_03244366_03259106 ILDR2 coding downstream 41843 3243598 ~ 3259106 (-)
CI01000009_03235111_03242103 NA coding downstream 58846 3235014 ~ 3242103 (-)
CI01000009_03306370_03311820 NA coding upstream 3628 3306289 ~ 3311820 (-)
CI01000009_03358707_03369503 PPP2R3B coding upstream 55347 3358008 ~ 3369577 (-)
CI01000009_03378591_03380390 NA coding upstream 75898 3378559 ~ 3381365 (-)
CI01000009_03568782_03574843 NA coding upstream 265994 3568655 ~ 3574843 (-)
CI01000009_03582190_03582916 NA coding upstream 279529 3582190 ~ 3583445 (-)
G52501 NA non-coding downstream 10126 3287318 ~ 3290823 (-)
G52513 NA non-coding downstream 21616 3278744 ~ 3279333 (-)
G52592 NA non-coding downstream 77150 3223490 ~ 3223799 (-)
G52593 NA non-coding downstream 77988 3222632 ~ 3222961 (-)
G52521 NA non-coding downstream 79007 3220732 ~ 3221942 (-)
G52623 NA non-coding upstream 79323 3381984 ~ 3386060 (-)
G52639 NA non-coding upstream 104002 3406663 ~ 3406876 (-)
G52670 NA non-coding upstream 151682 3454343 ~ 3454550 (-)
G52725 NA non-coding upstream 345053 3647714 ~ 3647979 (-)
G52735 NA non-coding upstream 428239 3730900 ~ 3731251 (-)
CI01000009_02885473_02893975 NA other downstream 401542 2883688 ~ 2893975 (-)
G52410 NA other downstream 738416 2551724 ~ 2562533 (-)
G52098 NA other downstream 1893322 1401932 ~ 1407627 (-)
G52828 NA other upstream 914759 4217420 ~ 4231469 (-)
G53515 NA other upstream 2199734 5502395 ~ 5505248 (-)
G55814 NA other upstream 5123160 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 5555491 8856310 ~ 8860563 (-)
G59097 NA other upstream 8985556 12288217 ~ 12289518 (-)

Expression


Co-expression Network