G51637



Basic Information


Item Value
gene id G51637
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3308526 ~ 3308759 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU58827
AATATGGAGTTGGCCCACCCTTTGCAGCTATAACAGCCTCAACTCTTCTGGGAAGGCTTTCCACAAGGTTTAGGAGTGTGTTTATGGGAATTTTTGACCATTCTTCTAGAAGCGCATTTGTGAGGTCAGGCAGTGATGTTGGCGAGAAGGCCTGGCTCGCAGTCTCCGCTCTAATTCATCCCAAAGGTGTTCTGTCGGGTTGAGGTCAGGACTCTGTGCAGGCCAATCAAGTTC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU58827 True 234 lncRNA 0.32 1 3308526 3308759

Neighbor


gene id symbol gene type direction distance location
CI01000009_03301176_03305406 LAMP1 coding upstream 2931 3301176 ~ 3305595 (+)
CI01000009_03276572_03283625 POU2F1B, POU2F1 coding upstream 24520 3276572 ~ 3284006 (+)
CI01000009_03211734_03220047 NXPE3 coding upstream 87219 3211734 ~ 3222297 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S coding upstream 101098 3202207 ~ 3208984 (+)
CI01000009_03164135_03169470 GPR161 coding upstream 138386 3162318 ~ 3170140 (+)
CI01000009_03313112_03329470 MED14 coding downstream 4353 3313112 ~ 3329510 (+)
CI01000009_03330968_03333405 NA coding downstream 21826 3330585 ~ 3333453 (+)
CI01000009_03335503_03355421 NA coding downstream 26744 3335503 ~ 3355426 (+)
CI01000009_03466999_03473248 SHOX, MOG-12 coding downstream 158094 3466853 ~ 3473414 (+)
CI01000009_03650884_03661357 TFDP1A, TFDP1 coding downstream 342125 3650884 ~ 3661357 (+)
G51569 NA non-coding upstream 17716 3287328 ~ 3290810 (+)
G51585 NA non-coding upstream 45567 3262336 ~ 3262959 (+)
G51581 NA non-coding upstream 46517 3261197 ~ 3262009 (+)
G51589 NA non-coding upstream 84661 3222759 ~ 3223865 (+)
G51638 NA non-coding downstream 319 3309078 ~ 3309537 (+)
G51639 NA non-coding downstream 2195 3310954 ~ 3311469 (+)
G51659 NA non-coding downstream 118807 3427566 ~ 3427773 (+)
G51673 NA non-coding downstream 286545 3595304 ~ 3599012 (+)
G51734 NA non-coding downstream 301476 3610235 ~ 3610474 (+)
G51529 NA other upstream 245939 3062033 ~ 3062587 (+)
G51274 NA other upstream 958040 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1407100 1897343 ~ 1919516 (+)
G51122 NA other upstream 1626560 1680146 ~ 1681966 (+)
G53388 NA other downstream 2213483 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2551543 5931718 ~ 5943899 (+)
G53651 NA other downstream 2936805 6245564 ~ 6248392 (+)
G56100 NA other downstream 5820541 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 6544600 9853929 ~ 9856587 (+)

Expression



Co-expression Network