Gene
RNA
| Item | Value |
|---|---|
| gene id | G51638 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 3309078 ~ 3309537 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU58828 | True | 460 | lncRNA | 0.37 | 1 | 3309078 | 3309537 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_03301176_03305406 | LAMP1 | coding | upstream | 3483 | 3301176 ~ 3305595 (+) |
| CI01000009_03276572_03283625 | POU2F1B, POU2F1 | coding | upstream | 25072 | 3276572 ~ 3284006 (+) |
| CI01000009_03211734_03220047 | NXPE3 | coding | upstream | 87771 | 3211734 ~ 3222297 (+) |
| CI01000009_03202999_03207060 | MPC2, MPC2.S | coding | upstream | 101650 | 3202207 ~ 3208984 (+) |
| CI01000009_03164135_03169470 | GPR161 | coding | upstream | 138938 | 3162318 ~ 3170140 (+) |
| CI01000009_03313112_03329470 | MED14 | coding | downstream | 3575 | 3313112 ~ 3329510 (+) |
| CI01000009_03330968_03333405 | NA | coding | downstream | 21048 | 3330585 ~ 3333453 (+) |
| CI01000009_03335503_03355421 | NA | coding | downstream | 25966 | 3335503 ~ 3355426 (+) |
| CI01000009_03466999_03473248 | SHOX, MOG-12 | coding | downstream | 157316 | 3466853 ~ 3473414 (+) |
| CI01000009_03650884_03661357 | TFDP1A, TFDP1 | coding | downstream | 341347 | 3650884 ~ 3661357 (+) |
| G51637 | NA | non-coding | upstream | 319 | 3308526 ~ 3308759 (+) |
| G51569 | NA | non-coding | upstream | 18268 | 3287328 ~ 3290810 (+) |
| G51585 | NA | non-coding | upstream | 46119 | 3262336 ~ 3262959 (+) |
| G51581 | NA | non-coding | upstream | 47069 | 3261197 ~ 3262009 (+) |
| G51589 | NA | non-coding | upstream | 85213 | 3222759 ~ 3223865 (+) |
| G51639 | NA | non-coding | downstream | 1417 | 3310954 ~ 3311469 (+) |
| G51659 | NA | non-coding | downstream | 118029 | 3427566 ~ 3427773 (+) |
| G51673 | NA | non-coding | downstream | 285767 | 3595304 ~ 3599012 (+) |
| G51734 | NA | non-coding | downstream | 300698 | 3610235 ~ 3610474 (+) |
| G51735 | NA | non-coding | downstream | 300943 | 3610480 ~ 3610852 (+) |
| G51529 | NA | other | upstream | 246491 | 3062033 ~ 3062587 (+) |
| G51274 | NA | other | upstream | 958592 | 2255099 ~ 2350486 (+) |
| CI01000009_01897343_01919208 | PIKFYVE | other | upstream | 1407652 | 1897343 ~ 1919516 (+) |
| G51122 | NA | other | upstream | 1627112 | 1680146 ~ 1681966 (+) |
| G53388 | NA | other | downstream | 2212705 | 5522242 ~ 5540638 (+) |
| CI01000009_05931829_05943829 | KCNH3 | other | downstream | 2550765 | 5931718 ~ 5943899 (+) |
| G53651 | NA | other | downstream | 2936027 | 6245564 ~ 6248392 (+) |
| G56100 | NA | other | downstream | 5819763 | 9129300 ~ 9130286 (+) |
| CI01000009_09853929_09854476 | SAP18 | other | downstream | 6543822 | 9853929 ~ 9856587 (+) |
