G51639


Basic Information

Item Value
gene id G51639
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3310954 ~ 3311469 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58829
GGGAAGGTTCTGTGCATATCTGGGGAAAATATTGAATCTCAGAAGTATTTTGTTTCCAATATGACCTGTTCAATCTCTATTCAGAATTGAATTAAAATTTAAAATAAAATATAGTTTCATGAGAAGTAACTTGCCGGCACGTATGGTCTCCTCTATGTTAGGGTCATGCTCAGCCTTTAATAGAGAATGATAGTACCCAGGATTCCTCTCCAACTGGTCCTGGGCTCCACTAGCAGCCATCCAGATCTGAGTGCGATGTTCACACGGAACCCCCTTCCTCACATATCGCTTCACTGCAAACCCAAACAACAGCTTCACAAAAGTTAAACATTTTTCTTATAAAATATAAAATATAAATGCCCACCTTTCAGATTCTTCTCCACTTTCACAGTGTCCTGCAAAAGTTTAGACCATTTCTTTGACCTTCTAGTGACAACAGCTAAATACTCAGACATTAGCTCCTCATTGGATTCATAGCTGGAATCCTCTGATCTCTCAAATCCATATTGGTCAACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU58829 True 516 lncRNA 0.39 1 3310954 3311469

Neighbor

gene id symbol gene type direction distance location
CI01000009_03301176_03305406 LAMP1 coding upstream 5359 3301176 ~ 3305595 (+)
CI01000009_03276572_03283625 POU2F1B, POU2F1 coding upstream 26948 3276572 ~ 3284006 (+)
CI01000009_03211734_03220047 NXPE3 coding upstream 89647 3211734 ~ 3222297 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S coding upstream 103526 3202207 ~ 3208984 (+)
CI01000009_03164135_03169470 GPR161 coding upstream 140814 3162318 ~ 3170140 (+)
CI01000009_03313112_03329470 MED14 coding downstream 1643 3313112 ~ 3329510 (+)
CI01000009_03330968_03333405 NA coding downstream 19116 3330585 ~ 3333453 (+)
CI01000009_03335503_03355421 NA coding downstream 24034 3335503 ~ 3355426 (+)
CI01000009_03466999_03473248 SHOX, MOG-12 coding downstream 155384 3466853 ~ 3473414 (+)
CI01000009_03650884_03661357 TFDP1A, TFDP1 coding downstream 339415 3650884 ~ 3661357 (+)
G51638 NA non-coding upstream 1417 3309078 ~ 3309537 (+)
G51637 NA non-coding upstream 2195 3308526 ~ 3308759 (+)
G51569 NA non-coding upstream 20144 3287328 ~ 3290810 (+)
G51585 NA non-coding upstream 47995 3262336 ~ 3262959 (+)
G51581 NA non-coding upstream 48945 3261197 ~ 3262009 (+)
G51659 NA non-coding downstream 116097 3427566 ~ 3427773 (+)
G51673 NA non-coding downstream 283835 3595304 ~ 3599012 (+)
G51734 NA non-coding downstream 298766 3610235 ~ 3610474 (+)
G51735 NA non-coding downstream 299011 3610480 ~ 3610852 (+)
G51736 NA non-coding downstream 299609 3611078 ~ 3611277 (+)
G51529 NA other upstream 248367 3062033 ~ 3062587 (+)
G51274 NA other upstream 960468 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1409528 1897343 ~ 1919516 (+)
G51122 NA other upstream 1628988 1680146 ~ 1681966 (+)
G53388 NA other downstream 2210773 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2548833 5931718 ~ 5943899 (+)
G53651 NA other downstream 2934095 6245564 ~ 6248392 (+)
G56100 NA other downstream 5817831 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 6541890 9853929 ~ 9856587 (+)

Expression


Co-expression Network