Gene
RNA
| Item | Value |
|---|---|
| gene id | G52623 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 3381984 ~ 3386060 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU59949 | True | 1749 | lncRNA | 0.38 | 3 | 3381984 | 3386060 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_03378591_03380390 | NA | coding | downstream | 619 | 3378559 ~ 3381365 (-) |
| CI01000009_03358707_03369503 | PPP2R3B | coding | downstream | 12407 | 3358008 ~ 3369577 (-) |
| CI01000009_03306370_03311820 | NA | coding | downstream | 70164 | 3306289 ~ 3311820 (-) |
| CI01000009_03292206_03295043 | NA | coding | downstream | 86941 | 3292206 ~ 3295043 (-) |
| CI01000009_03264437_03267242 | NA | coding | downstream | 114742 | 3264437 ~ 3267242 (-) |
| CI01000009_03568782_03574843 | NA | coding | upstream | 182595 | 3568655 ~ 3574843 (-) |
| CI01000009_03582190_03582916 | NA | coding | upstream | 196130 | 3582190 ~ 3583445 (-) |
| CI01000009_03591700_03598877 | SLC25A6, SLC25A5 | coding | upstream | 205368 | 3591428 ~ 3598877 (-) |
| CI01000009_03599584_03602070 | ASMTL | coding | upstream | 213289 | 3599349 ~ 3602070 (-) |
| CI01000009_03614390_03616151 | P2RY8 | coding | upstream | 227731 | 3613791 ~ 3616619 (-) |
| G52606 | NA | non-coding | downstream | 79323 | 3300949 ~ 3302661 (-) |
| G52501 | NA | non-coding | downstream | 91161 | 3287318 ~ 3290823 (-) |
| G52513 | NA | non-coding | downstream | 102651 | 3278744 ~ 3279333 (-) |
| G52592 | NA | non-coding | downstream | 158185 | 3223490 ~ 3223799 (-) |
| G52593 | NA | non-coding | downstream | 159023 | 3222632 ~ 3222961 (-) |
| G52639 | NA | non-coding | upstream | 20603 | 3406663 ~ 3406876 (-) |
| G52670 | NA | non-coding | upstream | 68283 | 3454343 ~ 3454550 (-) |
| G52725 | NA | non-coding | upstream | 261654 | 3647714 ~ 3647979 (-) |
| G52735 | NA | non-coding | upstream | 344840 | 3730900 ~ 3731251 (-) |
| G52736 | NA | non-coding | upstream | 345253 | 3731313 ~ 3731533 (-) |
| CI01000009_03261739_03262843 | NA | other | downstream | 120027 | 3261038 ~ 3262843 (-) |
| CI01000009_02885473_02893975 | NA | other | downstream | 482577 | 2883688 ~ 2893975 (-) |
| G52410 | NA | other | downstream | 819451 | 2551724 ~ 2562533 (-) |
| G52098 | NA | other | downstream | 1974357 | 1401932 ~ 1407627 (-) |
| G52828 | NA | other | upstream | 831360 | 4217420 ~ 4231469 (-) |
| G53515 | NA | other | upstream | 2116335 | 5502395 ~ 5505248 (-) |
| G55814 | NA | other | upstream | 5039761 | 8425821 ~ 8428012 (-) |
| CI01000009_08858198_08860555 | NA | other | upstream | 5472092 | 8856310 ~ 8860563 (-) |
| G59097 | NA | other | upstream | 8902157 | 12288217 ~ 12289518 (-) |
