LOC103031617


Basic Information

Item Value
gene id LOC103031617
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 2032895 ~ 2038742 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU135143
CTTGGCTGTGCTGGAGCTGCGGGTGCAGCTCCGTCTCCCGGGAGGATCCAGCCCGTCCAGCCCGTCCAGCTCCACCATGTCCAACAACAACGCCAGCTCCAGCCTGGCCGTGGCCTACAGAGCCGTCAAACAGCTGAGACTGGAGGCCAGCGTCCGCAGAATCcagGTGTCTCAGGCGGCCACAGACCTGAAGAACTTCTGCCTTCAAAATGCCCACAAAGACCCTCTGCTAATGGGCGTTCCCTCCGGCGACAACCCCTTCCGCCCCCCGAAATCCTGTGGGCTGCTCTAGAGTTGATGTTGACTGAAGATGCCTGAAGAAGATGGTCACCTGACAGGATATACTATCctgaaacactacacacactctctctctctctcacacacacacacacactctctctcacacacactacactacagagtTGTGAGAATTCGTCTTGCTGCGTTTATCTCTTTTTGTGGACCTTCAGATCAGagttatttaaatatctgataAAGCTGATGAGGTTACACTGTGCAGTCCACTTTGGTACGATCCACATGTAGTTTATTCAGACACTACAGTACTGTATTCACACTGTAGCTGAACTACATTACCCACAATTCTTCCTTTAGGATTATTTGGTTCCTTTTATCTGTTATAAAgaaaacaatgtttataataattAGTTTCATAATAAGGTTTTTAACACTGTTGGTAGACGTAATGAAGTGGACCATTCAAAGCAGGACTgcactgtttattgtttctacTGTTACCAGCTCACAATAGCCTTTGTTTTCAACAAACCAAAATGTTTAATCAGTATACGGTCATGTGACACTTAAATGAAAACTTTCGTCTATTTGAACATATTGGacaatattgaaatatatggacattttatctttatttgaactgttttaaacttaaacacgatttataaaattatttatacatacaacaaaaatataattattactaaaatgtgtaaaattagaGTAAGAAGAAGCACAGAGGATTtttttggaggagcctgtcttaTGCAAAACTCTGCATAAAAGGTGCTTATTctaatattacacatttttagtAAACGTTTTAGTACTTAGTAATAAATGTGGGTGTTTTCTAACCTTTACCacacaagaaaacaagaaaattgcatttatattcat
>XM_007229545.3
ACCCGGCGGTTCTTGGCTGTGCTGGAGCTGCGGGTGCAGCTCCGTCTCCCGGGAGGATCCAGCCCGTCCAGCCCGTCCAGCTCCACCATGTCCAACAACAACGCCAGCTCCAGCCTGGCCGTGGCCTACAGAGCCGTCAAACAGCTGAGACTGGAGGCCAGCGTCCGCAGAATCcagGTGTCTCAGGCGGCCACAGACCTGAAGAACTTCTGCCTTCAAAATGCCCACAAAGACCCTCTGCTAATGGGCGTTCCCTCCGGCGACAACCCCTTCCGCCCCCCGAAATCCTGTGGGCTGCTCTAGAGTTGATGTTGACTGAAGATGCCTGAAGAAGATGGTCACCTGACAGGATATACTATCctgaaacactacacacactctctctctctctcacacacacacacacactctctctcacacacactacactacagagtTGTGAGAATTCGTCTTGCTGCGTTTATCTCTTTTTGTGGACCTTCAGATCAGagttatttaaatatctgataAAGCTGATGAGGTTACACTGTGCAGTCCACTTTGGTACGATCCACATGTAGTTTATTCAGACACTACAGTACTGTATTCACACTGTAGCTGAACTACATTACCCACAATTCTTCCTTTAGGATTATTTGGTTCCTTTTATCTGTTATAAAgaaaacaatgtttataataattAGTTTCATAATAAGGTTTTTAACACTGTTGGTAGACGTAATGAAGTGGACCATTCAAAGCAGGACTgcactgtttattgtttctacTGTTACCAGCTCACAATAGCCTTTGTTTTCAACAAACCAAAATGTTTAATCAGTATACGGTCATGTGACACTTAAATGAAAACTTTCGTCTATTTGAACATATTGGacaatattgaaatatatggacattttatctttatttgaactgttttaaacttaaacacgatttataaaattatttatacatacaacaaaaatataattattactaaaatgtgtaaaattagaGTAAGAAGAAGCACAGAGGATTtttttggaggagcctgtcttaTGCAAAACTCTGCATAAAAGGTGCTTATTctaatattacacatttttagtAAACGTTTTAGTACTTAGTAATAAATGTGGGTGTTTTCTAACCTTTACCacacaagaaaacaagaaaattgcatttatattcattacaattattatttttacaatattgttCATATGAAGATTGAATCTCTATATGGTCTAATATGCTCAAAAAGACCAcgttttcagttttgttttttaatgctatttttttcacatgactAAAAGTCATAATCAGCATAATTAGTGATCAGTAAACTGTAAGATTTTATATGAAGAAGAAAACAAGAGAGTTTTTACTCTAAACATTTTGGAGTGTTTTATAAAAGATAGTAGCTGTCAGTTTTTAGATGTATTTACTGAAAATAGTCTTTtcctttaataatttattagcGCTGTGAGGCCGGGCTGTTTTATATAAGTATAGTTTTTACACACTATTCTGATGACACTAACACTACAGTAGCCGTTTTGCTTGGTGGGATCAAGCAGATTTTGTAGTTTGCTTTCggaaaacactt

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135143 False 1161 TUCP 0.40 3 2032906 2038326
XM_007229545.3 True 1588 mRNA 0.38 3 2032895 2038742

Neighbor

gene id symbol gene type direction distance location
LOC111188214 NA coding upstream 3218 2027880 ~ 2029677 (+)
LOC111193599 NA coding upstream 26676 2003435 ~ 2006219 (+)
LOC103045825 NA coding upstream 79095 1944299 ~ 1953800 (+)
LOC111193595 NA coding upstream 154726 1874918 ~ 1878169 (+)
LOC111193592 NA coding upstream 190418 1836564 ~ 1842477 (+)
LOC103030775 NA coding downstream 14258 2053000 ~ 2058543 (+)
cc2d1a NA coding downstream 30816 2069558 ~ 2092724 (+)
mri1 mri1,LOC107594353,LOC107703717,LOC107700835 coding downstream 61049 2099791 ~ 2115952 (+)
LOC103037292 zgc:158803,LOC108411937,LOC108258445,LOC107700834,LOC107598467,LOC107709610,LOC107747154 coding downstream 78384 2117126 ~ 2130647 (+)
cenpm cenpm coding downstream 93238 2131980 ~ 2138206 (+)
LOC103038253 NA non-coding upstream 8888 2019883 ~ 2024007 (+)
G100110 NA non-coding upstream 15274 2016723 ~ 2017621 (+)
G100115 NA non-coding upstream 37868 1994437 ~ 1995027 (+)
G100111 NA non-coding upstream 48803 1983650 ~ 1984092 (+)
LOC111193501 NA non-coding upstream 54781 1975353 ~ 1978114 (+)
LOC111193503 NA non-coding downstream 101084 2139826 ~ 2141091 (+)
G100149 NA non-coding downstream 109731 2148473 ~ 2149000 (+)
G100178 NA non-coding downstream 196148 2234890 ~ 2235162 (+)
G100175 NA non-coding downstream 220487 2259229 ~ 2260386 (+)
G100174 NA non-coding downstream 221917 2260659 ~ 2261235 (+)
LOC103038569 NA other upstream 16632 2012029 ~ 2016263 (+)
LOC103047668 NA other upstream 143658 1885228 ~ 1889237 (+)
LOC111193593 NA other upstream 179876 1845491 ~ 1853019 (+)
LOC111193582 NA other upstream 734518 1296415 ~ 1298377 (+)
G99710 NA other upstream 848626 1181427 ~ 1184269 (+)
LOC103031088 NA other downstream 1352 2040094 ~ 2051858 (+)
c12h19orf53 LOC103027500 other downstream 294865 2333607 ~ 2336332 (+)
LOC103026535 slc25a23a,LOC103026535,LOC107594260,LOC107703801,LOC107747161,LOC108258471 other downstream 304877 2343619 ~ 2368564 (+)
avpi1 NA other downstream 412659 2451401 ~ 2463385 (+)
LOC111193601 NA other downstream 455019 2493761 ~ 2500431 (+)

Expression


Co-expression Network