LOC103031088


Basic Information

Item Value
gene id LOC103031088
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 2040094 ~ 2051858 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU135144
atcatgaaaataaagaaaacgcattgaaaaagagaaggtgtgtccaaatttaatatttaaaggcattttcacaaatttgttgtttttattgttattataccTCAGTATTTTAACATAGCTGTAACACTATTATACACAAAGTCAagtgatttttattaaatgtttgctGCAcatcaaattgaaaaaaatcaggatttttgaTATCACTGATATCCTCATTAAAGCATGTTTAAGCATTTTATGACTGCACATTTTTCTAATATAAACCTGCCTTATGCTAACTGTGATGTACAGTAACAGCTTAGTAAAATCTGTGCCTTAAATAATTAACTTTAATGAACTTGAATTAACTTTAAAACCAGTGAATTTAgccagagggagaaacagagaaatTCAGCCTGAATTATAAATTCATGGTCCTCAATCAAGGATCCCATCCTCCACATCGCCCGGCCCTGGTGTAAACAGCTGTGGGTTTAtctgttttagggttttttttagtgtgttactttaaataaaatcttcCTCTTTAGAGCCTGAGTGCGTTTAGCAGTGATGGAATTGTAATAGTGTTTTAATTCGTTGATTAACgttaagcttttttatttttaacctcTGCTTCAACATTAATGGCAGTATCGATGATCTACATCATCTAAAGGTGAACTCTTGACCTAAATCTGGTAGATTTTACCTGTATTTATGtaatttctctcattttctgatGTTGTTGTGACGGACTGTTGAATCTCGAGTGCCTTATGAATCTgaattttagcatttctgcttTCCTGTTTGTAGTGTTTTAATAAAGCCTCCTGCATTTCA
>TU135145
TGCACATTTTTCTAATATAAACCTGCCTTATGCTAACTGTGATGTACAGTAACAGCTTAGTAAAATCTGTGCCTTAAATAATTAACTTTAATGAACTTGAATTAACTTTAAAACCAGTGAATTTAgccagagggagaaacagagaaatTCAGCCTGAATTATAAATTCATGGTCCTCAATCAAGGATCCCATCCTCCACATCGCCCGGCCCTGGTGTAAACAGCTGTGGGTTTAtctgttttagggttttttttagtgtgttactttaaataaaatcttcCTCTTTAGAGCCTGAGTGCGTTTAGCAGTGATGGAATTGTAATAGTGTTTTAATTCGTTGATTAACgttaagcttttttatttttaacctcTGCTTCAACATTAATGGCAGTATCGATGATCTACATCATCTAAAGGTGAACTCTTGACCTAAATCTGGTAGATTTTACCTGTATTTATGtaatttctctcattttctgatGTTGTTGTGACGGACTGTTGAATCTCGAGTGCCTTATGAATCTgaattttagcatttctgcttTCCTGTTTGTAGTGTTTTAATAAAGCCTCCTGCATTTCA
>XM_022674481.1
gattggctgaggtgAGAATCACCTGTGATCTCCTGCAGTGCGGCGGAAGGAAAGTGGAGGAAACTGAGTTAATAAAAGcCTCGGCTGAGTGCAGATTATGGCAAATAAACCCGGAGGAAGACCATTACCGTCCTGTGGAAGAGTTCTGGAGCACTCAGACATGCAGATCACTCGTATATCACTGCAGGCCAGTCCTCCCCACAGCGCCCCCTACAGGATCCTGCAGGAGGAACGGAAGGAGAAGAACAGCATGCTGCAGGAGCAGCTGGCTGAGAAAGATCAGTACATCTCCAGACTTCAGGAGGCGCTGCGGTTAGAGCGGGAGAAGatgGTGAAGCTGCAGTCTCGGTTTAATCAGCAGGGGGCGGAGCTCAGGCGCAGAGAGCAGCACATTAACAGAATGAGGGACAAACTCTCCCAGTTTACTGACCGACCCAGAGACCGTGGCCTGTcTGTGGAGATCTTAAACGCTCTCCCCAAGCCAGCAGGCCGAAGAGAGGCCATGTCCAGAGCTGCTAAGGCTGATGCCAGGAAAGATCAGGCGCTGCAGCTGATGCTGGAGAGGAGGGAAGCCGAGCTAAGAGAGGCTATGAAGCTCCGCCACAGCCTCACGACTCTACTGCACGCGCTCAGAAACGACATGCATCAGTCCCTACAGGAAAACAAGGATATAGAAGGAGAAgtagaagaaggaggaggaggaggaggggaggaAGAGAAGTTGGACACCAGTTGGCTGGTCCAATCAGAGCAGTCTCTGGGTGATCATGTGACTGGGGGTGTGGTTCTGGAGTGGTCTCAGGTGCAGAAGAGGCTGAGGGAGCTGCAGGAACAGAGTCCTGTTGCGATGAGAACAGATCAGGAGAAGCTCTTGGCTCAGCTTGAACAAGAGTTGGGGCAGAACAGAGAGTTGGTCCGAGTTCAGCAGCAGCTACTGCAGgacAGTGTGAACTCTCCTCTTCCAGACCCGCTGCTCGACTCCTATTACCTGGAGGAGTGGGAGCGGCTTCAGGACCGCTGGGTGGAGCTTAAGCGCCAGAGGCGGAGCTTCCAGCAGGAGAGGCAGGCTTTCACAGACGCTGCCATTCGATTGGGTCATGAGAGGTGCTTGTTTGAGCAGCAGAAAGCTGCAGTCCTGAAGCAGCATTTCCTCGATTCGTCTCCAATAACAAAGACCAGCCTTTCCAACAGGAGAGAGAGTACAGCACTCGGAGACCTGCGCGTGATGGCTCCGGACTCTCTGTGTCTTTCCCCCTGTGCTCCAATCACTCCCTCGTCTGAGGGGTCTGAGGGAACGCCCTGGTCAGATCAGAAGGTGGTGATGACCCCCAGCACCCCAGAGCTATACTCTGCTCTCCAGCTGCCCTACTACTGCAGGAGcGCTGTGGACAGTCCTCTCTCTGTGAACCTTAAGAAGAATCCACAGCAACATGTTTTCAGCCCTAAACGCATAAACATGGACGACTGGCCCTTTTAGCTCCAATTAAAACACCAGCTGTCTCCGCCAGTTTCTGTGTTTTCAGCGTTTAAACATCAAACCTTAGGTACTCAGGAAAGTGAGGAACTCTTAGGACTGGATTAGTTACTGGAATAGGAGTGTTTGGAGCAGAGCAATCACTACAGTGTGCGGAACAGGGGTTCCTCCTGGACCAGGGTGGAGAACCGCTGTTCCAACAGGATATAAGAGCAGGTAGAGGTTGTGGGATGTTTGTTTCGatttaaaaactgcagattTCATTAGAAAGTGTAAAAAAGGCTGTGTGTGATTTGAATGATTTTAATATAGcgtatgtatttaataaataaataaaaatgttaaaacactaataaaa
>XM_022674482.1
ggttcagatccggtgactgtggagttcagctcattttttattaagtacataaaactccacatgtgttcattcatagttttgatgcttcagtgagaatctacaatgtaaataatcatgaaaataaagaaaacgcattgaaaaagagaaggtgtgtccaaatttaatatttaaaggcattttcacaaatttgttgtttttattgttattataccTCAGTATTTTAACATAGCTGTAACACTATTATACACAAAGTCAagtgatttttattaaatgtttgctGCAcatcaaattgaaaaaaatcaggatttttgaTATCACTGATATCCTCATTAAAGCATGTTTAAGCATTTTATGACTGCACATTTTTCTAATATAAACCTGCCTTATGCTAACTGTGATGTACAGTAACAGCTTAGTAAAATCTGTGCCTTAAATAATTAACTTTAATGAACTTGAATTAACTTTAAAACCAGTGAATTTAgccagagggagaaacagagaaatTCAGCCTGAATTATAAATTCATGGTCCTCAATCAAGGATCCCATCCTCCACATCGCCCGGCCCTGGTGTAAACAGCTGTGGGTTTAtctgttttagggttttttttagtgtgttactttaaataaaatcttcCTCTTTAGAGCCTGAGTGCGTTTAGCAGTGATGGAATTGTAATAGTGTTTTAATTCGTTGATTAACgttaagcttttttatttttaacctcTGCTTCAACATTAATGGCAGTATCGATGATCTACATCATCTAAAGGTGAACTCTTGACCTAAATCTGGTAGATTTTACCTGTATTTATGtaatttctctcattttctgatGTTGTTGTGACGGACTGTTGAATCTCGAGTGCCTTATGAATCTgaattttagcatttctgcttTCCTGTTTGTAGTGTTTTAATAAAGCCTCCTGCATTTCACTCGCATCTGTGTTTGTCGTTTTTCTGCTATTCCTCCTTTCCTTCTGCTCCTTTCCTACCCTGGaagaaggaggaagagaaggGGAAGTGGAGAAGAGAAGGATCTGTAGTAATTTGGAAATGGCACAGCTGATTCCTTTCAGcCTCGGCTGAGTGCAGATTATGGCAAATAAACCCGGAGGAAGACCATTACCGTCCTGTGGAAGAGTTCTGGAGCACTCAGACATGCAGATCACTCGTATATCACTGCAGGCCAGTCCTCCCCACAGCGCCCCCTACAGGATCCTGCAGGAGGAACGGAAGGAGAAGAACAGCATGCTGCAGGAGCAGCTGGCTGAGAAAGATCAGTACATCTCCAGACTTCAGGAGGCGCTGCGGTTAGAGCGGGAGAAGatgGTGAAGCTGCAGTCTCGGTTTAATCAGCAGGGGGCGGAGCTCAGGCGCAGAGAGCAGCACATTAACAGAATGAGGGACAAACTCTCCCAGTTTACTGACCGACCCAGAGACCGTGGCCTGTcTGTGGAGATCTTAAACGCTCTCCCCAAGCCAGCAGGCCGAAGAGAGGCCATGTCCAGAGCTGCTAAGGCTGATGCCAGGAAAGATCAGGCGCTGCAGCTGATGCTGGAGAGGAGGGAAGCCGAGCTAAGAGAGGCTATGAAGCTCCGCCACAGCCTCACGACTCTACTGCACGCGCTCAGAAACGACATGCATCAGTCCCTACAGGAAAACAAGGATATAGAAGGAGAAgtagaagaaggaggaggaggaggaggggaggaAGAGAAGTTGGACACCAGTTGGCTGGTCCAATCAGAGCAGTCTCTGGGTGATCATGTGACTGGGGGTGTGGTTCTGGAGTGGTCTCAGGTGCAGAAGAGGCTGAGGGAGCTGCAGGAACAGAGTCCTGTTGCGATGAGAACAGATCAGGAGAAGCTCTTGGCTCAGCTTGAACAAGAGTTGGGGCAGAACAGAGAGTTGGTCCGAGTTCAGCAGCAGCTACTGCAGgacAGTGTGAACTCTCCTCTTCCAGACCCGCTGCTCGACTCCTATTACCTGGAGGAGTGGGAGCGGCTTCAGGACCGCTGGGTGGAGCTTAAGCGCCAGAGGCGGAGCTTCCAGCAGGAGAGGCAGGCTTTCACAGACGCTGCCATTCGATTGGGTCATGAGAGGTGCTTGTTTGAGCAGCAGAAAGCTGCAGTCCTGAAGCAGCATTTCCTCGATTCGTCTCCAATAACAAAGACCAGCCTTTCCAACAGGAGAGAGAGTACAGCACTCGGAGACCTGCGCGTGATGGCTCCGGACTCTCTGTGTCTTTCCCCCTGTGCTCCAATCACTCCCTCGTCTGAGGGGTCTGAGGGAACGCCCTGGTCAGATCAGAAGGTGGTGATGACCCCCAGCACCCCAGAGCTATACTCTGCTCTCCAGCTGCCCTACTACTGCAGGAGcGCTGTGGACAGTCCTCTCTCTGTGAACCTTAAGAAGAATCCACAGCAACATGTTTTCAGCCCTAAACGCATAAACATGGACGACTGGCCCTTTTAGCTCCAATTAAAACACCAGCTGTCTCCGCCAGTTTCTGTGTTTTCAGCGTTTAAACATCAAACCTTAGGTACTCAGGAAAGTGAGGAACTCTTAGGACTGGATTAGTTACTGGAATAGGAGTGTTTGGAGCAGAGCAATCACTACAGTGTGCGGAACAGGGGTTCCTCCTGGACCAGGGTGGAGAACCGCTGTTCCAACAGGATATAAGAGCAGGTAGAGGTTGTGGGATGTTTGTTTCGatttaaaaactgcagattTCATTAGAAAGTGTAAAAAAGGCTGTGTGTGATTTGAATGATTTTAATATAGcgtatgtatttaataaataaataaaaatgttaaaacactaataaaa
>XR_002650559.1
gattggctgaggtgAGAATCACCTGTGATCTCCTGCAGTGCGGCGGAAGGAAAGTGGAGGAAACTGAGTTAATAAAAGcCTCGGCTGAGTGCAGATTATGGCAAATAAACCCGGAGGAAGACCATTACCGTCCTGTGGAAGAGTTCTGGAGCACTCAGACATGCAGATCACTCGTATATCACTGCAGGCCAGTCCTCCCCACAGCGCCCCCTACAGGATCCTGCAGGAGGAACGGAAGGAGAAGAACAGCATGCTGCAGGAGCAGCTGGCTGAGAAAGATCAGTACATCTCCAGACTTCAGGAGGCGCTGCGGTTAGAGCGGGAGAAGatgGTGAAGCTGCAGTCTCGGTTTAATCAGCAGGGGGCGGAGCTCAGGCGCAGAGAGCAGCACATTAACAGAATGAGGGACAAACTCTCCCAGTTTACTGACCGACCCAGAGACCGTGGCCTGTcTGTGGAGATCTTAAACGCTCTCCCCAAGCCAGCAGGCCGAAGAGAGGCCATGTCCAGAGCTGCTAAGGCTGATGCCAGGAAAGATCAGGCGCTGCAGCTGATGCTGGAGAGGAGGGAAGCCGAGCTAAGAGAGGCTATGAAGCTCCGCCACAGCCTCACGACTCTACTGCACGCGCTCAGAAACGACATGCATCAGTCCCTACAGGAAAACAAGGATATAGAAGGAGAAgtagaagaaggaggaggaggaggaggggaggaAGAGAAGTTGGACACCAGTTGGCTGGTCCAATCAGAGCAGTCTCTGGGTGATCATGTGACTGGGGGTGTGGTTCTGGAGTGGTCTCAGGTGCAGAAGAGGCTGAGGGAGCTGCAGGAACAGAGTCCTGTTGCGATGAGAACAGATCAGGAGAAGCTCTTGGCTCAGCTTGAACAAGAGTTGGGGCAGAACAGAGAGTTGGTCCGAGTTCAGCAGCAGCTACTGCAGgacAGTGTGAACTCTCCTCTTCCAGACCCGCTGCTCGACTCCTATTACCTGGAGGAGTGGGAGCGGCTTCAGGACCGCTGGGTGGAGCTTAAGCGCCAGAGGCGGAGCTTCCAGCAGGAGAGGCAGGCTTTCACAGACGCTGCCATTCGATTGGGTCATGAGAGGTGCTTGTTTGAGCAGCAGAAAGCTGCAGTCCTGAAGCAGCATTTCCTCGATTCGTCTCCAATAACAAAGACCAGCCTTTCCAACAGGAGAGAGAGTACAGCACTCGGAGACCTGCGCGTGATGGCTCCGGACTCTCTGTGTCTTTCCCCCTGTGCTCCAATCACTCCCTCGTCTGAGGGGTCTGAGGGAACGCCCTGGTCAGATCAGAAGGTGGTGATGACCCCCAGCACCCCAGAGCTATACTCTGCTCTCCAGCTGCCCTACTACTGCAGGAGtcctccaggtggacggtggtttccggttgagagtacgctgtacACAATTGGCTGACACTTTTCAACAGTGGCTACATTTCCAAGCAGCCTAATAATTGTctgatttctcattttctgcaacGCTGTGGACAGTCCTCTCTCTGTGAACCTTAAGAAGAATCCACAGCAACATGTTTTCAGCCCTAAACGCATAAACATGGACGACTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135144 False 828 lncRNA 0.32 1 2040205 2041032
TU135145 False 583 lncRNA 0.35 1 2040450 2041032
XM_022674481.1 False 1832 mRNA 0.52 13 2042863 2051858
XM_022674482.1 True 2836 mRNA 0.45 13 2040094 2051858
XR_002650559.1 False 1589 misc_RNA 0.54 14 2042863 2051495

Neighbor

gene id symbol gene type direction distance location
LOC111188214 NA coding upstream 10417 2027880 ~ 2029677 (+)
LOC111193599 NA coding upstream 33875 2003435 ~ 2006219 (+)
LOC103045825 NA coding upstream 86294 1944299 ~ 1953800 (+)
LOC111193595 NA coding upstream 161925 1874918 ~ 1878169 (+)
LOC111193592 NA coding upstream 197617 1836564 ~ 1842477 (+)
LOC103030775 NA coding downstream 1142 2053000 ~ 2058543 (+)
cc2d1a NA coding downstream 17700 2069558 ~ 2092724 (+)
mri1 mri1,LOC107594353,LOC107703717,LOC107700835 coding downstream 47933 2099791 ~ 2115952 (+)
LOC103037292 zgc:158803,LOC108411937,LOC108258445,LOC107700834,LOC107598467,LOC107709610,LOC107747154 coding downstream 65268 2117126 ~ 2130647 (+)
cenpm cenpm coding downstream 80122 2131980 ~ 2138206 (+)
LOC103038253 NA non-coding upstream 16087 2019883 ~ 2024007 (+)
G100110 NA non-coding upstream 22473 2016723 ~ 2017621 (+)
G100115 NA non-coding upstream 45067 1994437 ~ 1995027 (+)
G100111 NA non-coding upstream 56002 1983650 ~ 1984092 (+)
LOC111193501 NA non-coding upstream 61980 1975353 ~ 1978114 (+)
LOC111193503 NA non-coding downstream 87968 2139826 ~ 2141091 (+)
G100149 NA non-coding downstream 96615 2148473 ~ 2149000 (+)
G100178 NA non-coding downstream 183032 2234890 ~ 2235162 (+)
G100175 NA non-coding downstream 207371 2259229 ~ 2260386 (+)
G100174 NA non-coding downstream 208801 2260659 ~ 2261235 (+)
LOC103031617 NA other upstream 1352 2032895 ~ 2038742 (+)
LOC103038569 NA other upstream 23831 2012029 ~ 2016263 (+)
LOC103047668 NA other upstream 150857 1885228 ~ 1889237 (+)
LOC111193593 NA other upstream 187075 1845491 ~ 1853019 (+)
LOC111193582 NA other upstream 741717 1296415 ~ 1298377 (+)
c12h19orf53 LOC103027500 other downstream 281749 2333607 ~ 2336332 (+)
LOC103026535 slc25a23a,LOC103026535,LOC107594260,LOC107703801,LOC107747161,LOC108258471 other downstream 291761 2343619 ~ 2368564 (+)
avpi1 NA other downstream 399543 2451401 ~ 2463385 (+)
LOC111193601 NA other downstream 441903 2493761 ~ 2500431 (+)
LOC111193505 NA other downstream 558659 2610517 ~ 2625505 (+)

Expression


Co-expression Network