c12h19orf53 (LOC103027500)


Basic Information

Item Value
gene id c12h19orf53
gene name LOC103027500
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 2333607 ~ 2336332 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU135165
GGACGCGGGGGACTTTTATTGTGCTCAGGGCTTTTATTATGTACTAATCCTTTAAGCTGGTTGTTTCCGGTCGCGATGGCGCAGGGTAAGCAGAAGTTTAAAGCGCAGAAATCCGGAGGATCTAAGAAGCCGCAGAATAAACCGCGTGGAGTGAAGAAAGGAGGGAGGGTCATCGCACCCAAGAAGGCCAGAAttgtgcagcagcagaagctgaaaaaggatctGGATGTGGCTATCAGGAATAAGATCGAGGAGGAGATCACTCAGAAGGCGAGCTCCTCTCTGCACAAGAAGCTGAGTGTGCTGAAAGCTCCGCAggggaaaggaggaggaggagcctcTAAACCcggagcttctgctgctggaccatccaaataaccacacacacactcatacacactcatacacacacacacatacacagttgcTGGTGGGTAGTTCACAGCACTGTAACTGTAATGTTTGGCCACTAGGTGGCTGCAGTAGCTTGAATGTGGAGACCAAGTGCAGAAATAAAGGCTGAAATTCCAGAATCAGCTTTAATTCAGGGTTTAATGAACTGATAAAAAcatcaaatatattatatacattcgTGAAATAAACATCAGTAATCAACTTTAAGAGAATTGGTTATATTAAAGAGTCCATATCCCAATCCTGCAGCTCTTTTCTGTGATTTGGGGGGTTTAATATACTGACTGTAAATTACTGGATTCCTGGAGGTGTGTTCATACTTACATCCATATCTAATATTAGGGCTGCATAATATAAGCAGTCACTCCTACAAAAGCAGGATCAACCCTTTTAATACCCCTTAATGAATGAGCAGAtgtcccaaaacttttgtccatatagaaGGATGTATCTGGTTGATATTGTGCAGTCCTGTGTTAAACCCACACAGTTATAAATGCTGTAATAAAACTGACTCTGCTGCTGTTCTGCTTGTATTCTATGGTTGTTAGAATAAACTGAGATTAACGGAACATCATGAT
>XM_007229533.3
CTTTTATTGTGCTCAGGGCTTTTATTATGTACTAATCCTTTAAGCTGGTTGTTTCCGGTCGCGATGGCGCAGGGTAAGCAGAAGTTTAAAGCGCAGAAATCCGGAGGATCTAAGAAGCCGCAGAATAAACCGCGTGGAGTGAAGAAAGGAGGGAGGGTCATCGCACCCAAGAAGGCCAGAAttgtgcagcagcagaagctgaaaaaggatctGGATGTGGCTATCAGGAATAAGATCGAGGAGGAGATCACTCAGAAGGCGAGCTCCTCTCTGCACAAGAAGCTGAGTGTGCTGAAAGCTCCGCAggggaaaggaggaggaggagcctcTAAACCcggagcttctgctgctggaccatccaaataaccacacacacactcatacacactcatacacacacacacatacacagttgcTGGTGGGTAGTTCACAGCACTGTAACTGTAATGTTTGGCCACTAGGTGGCTGCAGTAGCTTGAATGTGGAGACCAAGTGCAGAAATAAAGGCTGAAATTCCAGAATCAGCTTTAATTCAGGGTTTAATGAACTGATAAAAAcatcaaatatattatatacattcgTGAAATAAACATCAGTAATCAACTTTAAGAGAATTGGTTATATTAAAGAGTCCATATCCCAATCCTGCAGCTCTTTTCTGTGATTTGGGGGGTTTAATATACTGACTGTAAATTACTGGATTCCTGGAGGTGTGTTCATACTTACATCCATATCTAATATTAGGGCTGCATAATATAAGCAGTCACTCCTACAAAAGCAGGATCAACCCTTTTAATACCCCTTAATGAATGAGCAGAtgtcccaaaacttttgtccatatagaaGGATGTATCTGGTTGATATTGTGCAGTCCTGTGTTAAACCCACACAGTTATAAATGCTGTAATAAAACTGACTCTGCTGCTGTTCTGCTTGTATTCTATGGTTGTTAGAATAAACTGAGATTAACGGAACATCATGA

Function

NR:

description
leydig cell tumor 10 kDa protein homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135165 True 995 TUCP 0.43 3 2333607 2336332
XM_007229533.3 False 982 mRNA 0.42 3 2333619 2336331

Neighbor

gene id symbol gene type direction distance location
vps54 vps54,LOC107709616 coding upstream 5345 2308299 ~ 2328262 (+)
LOC103028349 NA coding upstream 103584 2222873 ~ 2230023 (+)
LOC103028654 rab1a,LOC108436370,LOC105021598,LOC107676578,LOC107666439,LOC106585917 coding upstream 120798 2205433 ~ 2212809 (+)
cenpm cenpm coding upstream 195401 2131980 ~ 2138206 (+)
LOC103037292 zgc:158803,LOC108411937,LOC108258445,LOC107700834,LOC107598467,LOC107709610,LOC107747154 coding upstream 202960 2117126 ~ 2130647 (+)
khsrp khsrp coding downstream 33624 2369956 ~ 2389979 (+)
LOC103025604 LOC108436360,LOC107598482,LOC107700849,LOC107747162 coding downstream 65222 2401554 ~ 2415821 (+)
LOC103022670 pgam1,LOC108436383,LOC108258456,LOC107729838,LOC107700858,LOC107598490 coding downstream 168153 2504485 ~ 2506380 (+)
exosc1 exosc1,LOC107700859,LOC107598491 coding downstream 172204 2508536 ~ 2518926 (+)
pkd1 pkd1 coding downstream 438826 2775158 ~ 2916200 (+)
G100194 NA non-coding upstream 23504 2309716 ~ 2310103 (+)
G100177 NA non-coding upstream 70121 2261858 ~ 2263486 (+)
G100174 NA non-coding upstream 72372 2260659 ~ 2261235 (+)
G100175 NA non-coding upstream 73221 2259229 ~ 2260386 (+)
G100178 NA non-coding upstream 98445 2234890 ~ 2235162 (+)
G100199 NA non-coding downstream 8701 2345033 ~ 2345669 (+)
G100202 NA non-coding downstream 18995 2355327 ~ 2356036 (+)
G100205 NA non-coding downstream 95823 2432155 ~ 2435667 (+)
G100216 NA non-coding downstream 154467 2490799 ~ 2493218 (+)
G100221 NA non-coding downstream 189225 2525557 ~ 2537407 (+)
LOC103031088 NA other upstream 281749 2040094 ~ 2051858 (+)
LOC103031617 NA other upstream 294865 2032895 ~ 2038742 (+)
LOC103038569 NA other upstream 317344 2012029 ~ 2016263 (+)
LOC103047668 NA other upstream 444370 1885228 ~ 1889237 (+)
LOC111193593 NA other upstream 480588 1845491 ~ 1853019 (+)
LOC103026535 slc25a23a,LOC103026535,LOC107594260,LOC107703801,LOC107747161,LOC108258471 other downstream 7287 2343619 ~ 2368564 (+)
avpi1 NA other downstream 115069 2451401 ~ 2463385 (+)
LOC111193601 NA other downstream 157429 2493761 ~ 2500431 (+)
LOC111193505 NA other downstream 274185 2610517 ~ 2625505 (+)
tekt4 LOC108436369 other downstream 305755 2642087 ~ 2650150 (+)

Expression


Co-expression Network