G100202


Basic Information

Item Value
gene id G100202
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 2355327 ~ 2356036 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU135233
gctagctcttttgtcgttcagaggtaagtattatcggcctgtagcctgctgctaaccccggctagcactgctagagcagcattagcattagctttgctgcagtgctagctcttttgtcgttcagaggtgagtattaatggcctatagcctgctgcttaacccagctagcactgctggagcagcattaacattagctttgctgcagtgctagctcttttgtcgttcagaggtaagtattatcggcctgtagcctgctgcagaaaataggcgtttataaatagtgcatcttataatctggtgcaccgtataatccgaaaaatacggtacatgaTTATAAGTTTAGACTGatatgtgttatttttattgagctacacatacagaagtagtgtaaTAATCCATCAGATTCAGGCAGCttcaatattctcacacagttcctgcagattgtgCGATAggggtataggagtgtttatggAGGTAGGCTCCTGAGattgtagcagcagcagcagcatgtgaACGAGCATTATCCTGCCAAAACAGTGCTCTGGAGTGTGCAGAGTTCAGTAAAGGTaaagccactggttgcaggaccttattaacaTAATGTTGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135233 True 607 lncRNA 0.44 2 2355327 2356036

Neighbor

gene id symbol gene type direction distance location
vps54 vps54,LOC107709616 coding upstream 27065 2308299 ~ 2328262 (+)
LOC103028349 NA coding upstream 125304 2222873 ~ 2230023 (+)
LOC103028654 rab1a,LOC108436370,LOC105021598,LOC107676578,LOC107666439,LOC106585917 coding upstream 142518 2205433 ~ 2212809 (+)
cenpm cenpm coding upstream 217121 2131980 ~ 2138206 (+)
LOC103037292 zgc:158803,LOC108411937,LOC108258445,LOC107700834,LOC107598467,LOC107709610,LOC107747154 coding upstream 224680 2117126 ~ 2130647 (+)
khsrp khsrp coding downstream 13920 2369956 ~ 2389979 (+)
LOC103025604 LOC108436360,LOC107598482,LOC107700849,LOC107747162 coding downstream 45518 2401554 ~ 2415821 (+)
LOC103022670 pgam1,LOC108436383,LOC108258456,LOC107729838,LOC107700858,LOC107598490 coding downstream 148449 2504485 ~ 2506380 (+)
exosc1 exosc1,LOC107700859,LOC107598491 coding downstream 152500 2508536 ~ 2518926 (+)
pkd1 pkd1 coding downstream 419122 2775158 ~ 2916200 (+)
G100199 NA non-coding upstream 9658 2345033 ~ 2345669 (+)
G100194 NA non-coding upstream 45224 2309716 ~ 2310103 (+)
G100177 NA non-coding upstream 91841 2261858 ~ 2263486 (+)
G100174 NA non-coding upstream 94092 2260659 ~ 2261235 (+)
G100175 NA non-coding upstream 94941 2259229 ~ 2260386 (+)
G100205 NA non-coding downstream 76119 2432155 ~ 2435667 (+)
G100216 NA non-coding downstream 134763 2490799 ~ 2493218 (+)
G100221 NA non-coding downstream 169521 2525557 ~ 2537407 (+)
G100237 NA non-coding downstream 227485 2583521 ~ 2584324 (+)
G100240 NA non-coding downstream 271650 2627686 ~ 2703276 (+)
c12h19orf53 LOC103027500 other upstream 18995 2333607 ~ 2336332 (+)
LOC103031088 NA other upstream 303469 2040094 ~ 2051858 (+)
LOC103031617 NA other upstream 316585 2032895 ~ 2038742 (+)
LOC103038569 NA other upstream 339064 2012029 ~ 2016263 (+)
LOC103047668 NA other upstream 466090 1885228 ~ 1889237 (+)
avpi1 NA other downstream 95365 2451401 ~ 2463385 (+)
LOC111193601 NA other downstream 137725 2493761 ~ 2500431 (+)
LOC111193505 NA other downstream 254481 2610517 ~ 2625505 (+)
tekt4 LOC108436369 other downstream 286051 2642087 ~ 2650150 (+)
G100300 NA other downstream 688591 3044627 ~ 3046637 (+)

Expression


Co-expression Network