G100216


Basic Information

Item Value
gene id G100216
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 2490799 ~ 2493218 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU135254
ACTCTTCACACTGACTGCACCTATCCATCTTCAAAAGCTCCTCATCAGCTCCTAAAAAGGATTTTCATCAGATCTTCAAAAGCTCTTCATCAGCTCCTCATCAGCTCTTCATCAGATCTTGAATAGCTCATCAGCTCTTCGAAAGCTCTTCATCAGCAGTTCATCAGATCTTTTATCAGCTCTTTAACGGCTCTTCTTTCTATCAGCTCTTCTAGGCTTTTCTTCAAGTACCCACCAAATATTTAAGAAACTCTTCATCAACTGTCCATCATCTCTTCATCAGCTGCTCATCAGATTCTTAGGTAGCTCTCGATCAGATCCTTGTCAGCTCTTCATCAGATCTTTAATTATCTCTTAAGCAGATCTTTAGTTACCTCCTTGTCAGGTCTTTAATTAGCTCTTCATCAGCTCATCATCTCTTTGTTAGCTCTTCACTAGATCTTTAAGCAGTTGTTTATTAGCTGTTCAGCAGGTCTGTGTTAGATCTTCATTAGCTCTCTAAACAGCTCTTCATCAGACTTTCAGtTGACCTTTAACCTCCAGAGGAGTTTGAATGGAGACGGTTTCTGAACTTTCACCGGTATCAGAGCTCTCCACCTGCATGCAGAGCCTCCTCTCCCAGCACAGTAGTTTGAGTCCTGAGGGTGAAGTGTCTCTGGAGCTGAAGAGTCCTGAGAGAAAGCACacagaccagagaaaccaactaccAGAGACGCCAACAGTCAGCAGGAGGACACCTCAGAgTAAAATGTCCTCACCCCAGTGGCCATCATTAAAACTGGTACCATAAACTTTTTATACTTTGATAATACTTATTCTAGTGCtgttattattcattaaaaaacaataacaccAAGAAATTGATAAGTGGTATCTAATGAATCTAATGAATCtaaatttattttgtataatgtgtttatatactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135254 True 991 lncRNA 0.41 5 2490799 2493218

Neighbor

gene id symbol gene type direction distance location
LOC103025604 LOC108436360,LOC107598482,LOC107700849,LOC107747162 coding upstream 74978 2401554 ~ 2415821 (+)
khsrp khsrp coding upstream 100820 2369956 ~ 2389979 (+)
vps54 vps54,LOC107709616 coding upstream 162537 2308299 ~ 2328262 (+)
LOC103028349 NA coding upstream 260776 2222873 ~ 2230023 (+)
LOC103028654 rab1a,LOC108436370,LOC105021598,LOC107676578,LOC107666439,LOC106585917 coding upstream 277990 2205433 ~ 2212809 (+)
LOC103022670 pgam1,LOC108436383,LOC108258456,LOC107729838,LOC107700858,LOC107598490 coding downstream 11267 2504485 ~ 2506380 (+)
exosc1 exosc1,LOC107700859,LOC107598491 coding downstream 15318 2508536 ~ 2518926 (+)
pkd1 pkd1 coding downstream 281940 2775158 ~ 2916200 (+)
nthl1 nthl1 coding downstream 504341 2997559 ~ 3004262 (+)
slc9a3r2 slc9a3r2 coding downstream 515643 3008861 ~ 3031715 (+)
G100205 NA non-coding upstream 55132 2432155 ~ 2435667 (+)
G100202 NA non-coding upstream 134763 2355327 ~ 2356036 (+)
G100199 NA non-coding upstream 145130 2345033 ~ 2345669 (+)
G100194 NA non-coding upstream 180696 2309716 ~ 2310103 (+)
G100177 NA non-coding upstream 227313 2261858 ~ 2263486 (+)
G100221 NA non-coding downstream 32339 2525557 ~ 2537407 (+)
G100237 NA non-coding downstream 90303 2583521 ~ 2584324 (+)
G100240 NA non-coding downstream 134468 2627686 ~ 2703276 (+)
G100245 NA non-coding downstream 136594 2629812 ~ 2633083 (+)
G100249 NA non-coding downstream 162413 2655631 ~ 2673061 (+)
avpi1 NA other upstream 27414 2451401 ~ 2463385 (+)
LOC103026535 slc25a23a,LOC103026535,LOC107594260,LOC107703801,LOC107747161,LOC108258471 other upstream 122235 2343619 ~ 2368564 (+)
c12h19orf53 LOC103027500 other upstream 154467 2333607 ~ 2336332 (+)
LOC103031088 NA other upstream 438941 2040094 ~ 2051858 (+)
LOC103031617 NA other upstream 452057 2032895 ~ 2038742 (+)
LOC111193601 NA other downstream 543 2493761 ~ 2500431 (+)
LOC111193505 NA other downstream 117299 2610517 ~ 2625505 (+)
tekt4 LOC108436369 other downstream 148869 2642087 ~ 2650150 (+)
G100300 NA other downstream 551409 3044627 ~ 3046637 (+)
LOC103046164 NA other downstream 595435 3088653 ~ 3117263 (+)

Expression


Co-expression Network