LOC111193601


Basic Information

Item Value
gene id LOC111193601
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 2493761 ~ 2500431 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU135257
AAGCGAGTGCGGGTGAAGCTGTTCAGCAGGTCCAGTCCTGACTCTGAGGAGGAGGTGCGGAGCAAAGTGAAGAGACCCAATCACAGCTCTCCACAAGAGGGCGCTGTTCACCACAGCCAACCACAATCACCTGATCCAGAGTCGGTTGCACTCTTCCAAAGACTGAGTGGTCCAGGAGGAaatctgctcacacacacatccctgAGCCAACCGTCACTGACCAGCACCTGATTGGAGACTTCACATCATGTGCTTCCTGTGGAGCGTGTGGGTTATCAGGAGCTTCACTGTGTTTCTGCTCAGACTGTGGCGGGTCTGATCACTGCTCAGTTCAGCGCTGTGGTGGAAGATTTCCTCATCATAGACTGTCGGTACCCATACGAGTTTAAAGGAGGACACATTAAGGGAGCGGTGAACCTGTACACTGAGCATCAGATCCACCAAGCCTTCCTCCAGAGCTTCTCCAACTTCCAGACTTCCCCAGGAGCTCAGCAGGACCCTCGTAGTCCAGAGGCGGGCGCTGTGGGGGGAGTGCAGGGTCCGGGCAGTGGTGGATCCCGGTCATCAGCAGTATCAGGAGAGATTAAAGATGGAGGATCATCATGTCCCAGGAAGCTGATCGTTTTCCACTGCGAGTTTTCATCAGAGAGAGGACCACGCCTgtGTCAGTATCTGAGGGAGCTGGATCGAGCTGTAAATACTCAGAATTATCCTCTACTGCTCTATCCTGAACTCTACCTGCTGCAGGGAGGATACaaacacttctacacacactacccgGATCTGTGTGATCCCTGCAATTATGTCCATGCGTCATCAGGACTTCAGGGAGCAGCTTCAACGATTCAGCAGGAAAAAGGATCCGCATCACAGCAGACGGCCAATCAGATCACAGCAGAGGACGGCACGATTTTAACAGTGACCATCAGTCGGCCTTGTCCCCATCCCATCACATCGCATCATCacatcatattacattatagCTGTGTGTGCAGTGTCTGCTCTGTACTGTAGTGCTTCTGACAGACCTCACCTAATAAAGCTGGACGTGATGctctacctgtgt
>XM_022675013.1
ATGTGgAAGCGAGTGCGGGTGAAGCTGTTCAGCAGGTCCAGTCCTGACTCTGAGGAGGAGGTGCGGAGCAAAGTGAAGAGACCCAATCACAGCTCTCCACAAGAGGGCGCTGTTCACCACAGCCAACCACAATCACCTGATCCAGAGTATgTCGGTTGCACTCTTCCAAAGACTGAGTGGTCCAGGAGGAaatctgctcacacacacatccctgAGCCAACCGTCACTGACCAGCACCTGATTGGAGACTTCAGTAAGCATCATGTGCTTCCTGTGGAGCGTGTGGGTTATCAGGAGCTTCACTGTGTTTCTGCTCAGACTGTGGCGGGTCTGATCACTGCTCAGTTCAGCGCTGTGGTGGAAGATTTCCTCATCATAGACTGTCGGTACCCATACGAGTTTAAAGGAGGACACATTAAGGGAGCGGTGAACCTGTACACTGAGCATCAGATCCACCAAGCCTTCCTCCAGAGCTTCTCCAACTTCCAGACTTCCCCAGGAGCTCAGCAGGACCCTCGTAGTCCAGAGGCGGGCGCTGTGGGGGGAGTGCAGGGTCCGGGCAGTGGTGGATCCCGGTCATCAGCAGTATCAGGAGAGATTAAAGATGGAGGATCATCATGTCCCAGGAAGCTGATCGTTTTCCACTGCGAGTTTTCATCAGAGAGAGGACCACGCCTgtGTCAGTATCTGAGGGAGCTGGATCGAGCTGTAAATACTCAGAATTATCCTCTACTGCTCTATCCTGAACTCTACCTGCTGCAGGGAGGATACaaacacttctacacacactacccgGATCTGTGTGATCCCTGCAATTATGTCCATGCGTCATCAGGACTTCAGGGAGCAGCTTCAACGATTCAGCAGGAAAAAGGATCCGCATCACAGCAGACGGCCAATCAGATCACAGCAGAGGACGGCACGATTTTAACAGTGACCATCAGTCGGCCTTGTCCCCATCCCATCACATCGCATCATCacatcatattacattatagCTGTGTGTGCAGTGTCTGCTCTGTACTGTAGTGCTTCTGACAGACCTCACCTAATAAAGCTGGACGTGATGctcta

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135257 False 1066 lncRNA 0.52 7 2493881 2500431
XM_022675013.1 True 1074 mRNA 0.52 9 2493761 2500424

Neighbor

gene id symbol gene type direction distance location
LOC103025604 LOC108436360,LOC107598482,LOC107700849,LOC107747162 coding upstream 77940 2401554 ~ 2415821 (+)
khsrp khsrp coding upstream 103782 2369956 ~ 2389979 (+)
vps54 vps54,LOC107709616 coding upstream 165499 2308299 ~ 2328262 (+)
LOC103028349 NA coding upstream 263738 2222873 ~ 2230023 (+)
LOC103028654 rab1a,LOC108436370,LOC105021598,LOC107676578,LOC107666439,LOC106585917 coding upstream 280952 2205433 ~ 2212809 (+)
LOC103022670 pgam1,LOC108436383,LOC108258456,LOC107729838,LOC107700858,LOC107598490 coding downstream 4054 2504485 ~ 2506380 (+)
exosc1 exosc1,LOC107700859,LOC107598491 coding downstream 8105 2508536 ~ 2518926 (+)
pkd1 pkd1 coding downstream 274727 2775158 ~ 2916200 (+)
nthl1 nthl1 coding downstream 497128 2997559 ~ 3004262 (+)
slc9a3r2 slc9a3r2 coding downstream 508430 3008861 ~ 3031715 (+)
G100216 NA non-coding upstream 543 2490799 ~ 2493218 (+)
G100205 NA non-coding upstream 58094 2432155 ~ 2435667 (+)
G100202 NA non-coding upstream 137725 2355327 ~ 2356036 (+)
G100199 NA non-coding upstream 148092 2345033 ~ 2345669 (+)
G100194 NA non-coding upstream 183658 2309716 ~ 2310103 (+)
G100221 NA non-coding downstream 25126 2525557 ~ 2537407 (+)
G100237 NA non-coding downstream 83090 2583521 ~ 2584324 (+)
G100240 NA non-coding downstream 127255 2627686 ~ 2703276 (+)
G100245 NA non-coding downstream 129381 2629812 ~ 2633083 (+)
G100249 NA non-coding downstream 155200 2655631 ~ 2673061 (+)
avpi1 NA other upstream 30376 2451401 ~ 2463385 (+)
LOC103026535 slc25a23a,LOC103026535,LOC107594260,LOC107703801,LOC107747161,LOC108258471 other upstream 125197 2343619 ~ 2368564 (+)
c12h19orf53 LOC103027500 other upstream 157429 2333607 ~ 2336332 (+)
LOC103031088 NA other upstream 441903 2040094 ~ 2051858 (+)
LOC103031617 NA other upstream 455019 2032895 ~ 2038742 (+)
LOC111193505 NA other downstream 110086 2610517 ~ 2625505 (+)
tekt4 LOC108436369 other downstream 141656 2642087 ~ 2650150 (+)
G100300 NA other downstream 544196 3044627 ~ 3046637 (+)
LOC103046164 NA other downstream 588222 3088653 ~ 3117263 (+)
G100314 NA other downstream 658225 3158656 ~ 3209330 (+)

Expression


Co-expression Network