G100221


Basic Information

Item Value
gene id G100221
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 2525557 ~ 2537407 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU135261
atatttggtggaataaccctggtttttaatcacagttttctttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaggcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggtttttaatttggtaaaatcaaagaaattaatcattttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135261 True 238 lncRNA 0.35 2 2525557 2537407

Neighbor

gene id symbol gene type direction distance location
exosc1 exosc1,LOC107700859,LOC107598491 coding upstream 6631 2508536 ~ 2518926 (+)
LOC103022670 pgam1,LOC108436383,LOC108258456,LOC107729838,LOC107700858,LOC107598490 coding upstream 19177 2504485 ~ 2506380 (+)
LOC103025604 LOC108436360,LOC107598482,LOC107700849,LOC107747162 coding upstream 109736 2401554 ~ 2415821 (+)
khsrp khsrp coding upstream 135578 2369956 ~ 2389979 (+)
vps54 vps54,LOC107709616 coding upstream 197295 2308299 ~ 2328262 (+)
pkd1 pkd1 coding downstream 237751 2775158 ~ 2916200 (+)
nthl1 nthl1 coding downstream 460152 2997559 ~ 3004262 (+)
slc9a3r2 slc9a3r2 coding downstream 471454 3008861 ~ 3031715 (+)
LOC111193603 NA coding downstream 605643 3143050 ~ 3149166 (+)
LOC111193604 NA coding downstream 617811 3155218 ~ 3159534 (+)
G100216 NA non-coding upstream 32339 2490799 ~ 2493218 (+)
G100205 NA non-coding upstream 89890 2432155 ~ 2435667 (+)
G100202 NA non-coding upstream 169521 2355327 ~ 2356036 (+)
G100199 NA non-coding upstream 179888 2345033 ~ 2345669 (+)
G100194 NA non-coding upstream 215454 2309716 ~ 2310103 (+)
G100237 NA non-coding downstream 46114 2583521 ~ 2584324 (+)
G100240 NA non-coding downstream 90279 2627686 ~ 2703276 (+)
G100245 NA non-coding downstream 92405 2629812 ~ 2633083 (+)
G100249 NA non-coding downstream 118224 2655631 ~ 2673061 (+)
G100251 NA non-coding downstream 127086 2664493 ~ 2718738 (+)
LOC111193601 NA other upstream 25126 2493761 ~ 2500431 (+)
avpi1 NA other upstream 62172 2451401 ~ 2463385 (+)
LOC103026535 slc25a23a,LOC103026535,LOC107594260,LOC107703801,LOC107747161,LOC108258471 other upstream 156993 2343619 ~ 2368564 (+)
c12h19orf53 LOC103027500 other upstream 189225 2333607 ~ 2336332 (+)
LOC103031088 NA other upstream 473699 2040094 ~ 2051858 (+)
LOC111193505 NA other downstream 73110 2610517 ~ 2625505 (+)
tekt4 LOC108436369 other downstream 104680 2642087 ~ 2650150 (+)
G100300 NA other downstream 507220 3044627 ~ 3046637 (+)
LOC103046164 NA other downstream 551246 3088653 ~ 3117263 (+)
G100314 NA other downstream 621249 3158656 ~ 3209330 (+)

Expression


Co-expression Network