G51673


Basic Information

Item Value
gene id G51673
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3595304 ~ 3599012 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58866
TGAAGCACAAAGCTATTACCTTTAGCAGTGTCATAGATGCCGAAGTAGGCCGCCCTGTAAATAATGATGCCCTGGACAGAGACGTTGAAGCCCTGGTACAGACCCCGCAACCCGTCTGACTTAAAGATTCTGACCAGGCAGTCGGCCAGCCCATTGAACTCTCTGGTGCTGCCAGCTTTCCCGACATCTGCAGCCAAACGGGTACGAGCAAAATCTAGGGGGTAGACGAAGCAGAGGGAAGTGGCTCCTGCAGCTCCACCAGAGGCCAAGTTGCCAGCAAAGTATCGCCAGAACTGCGTGTGCTTATCAACGCCACCCAAGAATACCTGTTTATACTTGTCCTTGAAGGCAAAGTTGAGGGCTTGTGTGGGGAAATAGCGAATGACGTTGGCTAGGTTGCCGCGCCAGAAGGAAACAAAGCCTTGCTCCTTAGGAATCCTCACAATACAGTCAACAATACCTTTGTACTGTTTGTCAGCACTGATCTGCTTGCTGGCATGTTGTACCTGAGCAGCAGTTTGACTCTCTCTATCGGTGCGACTGCGGTTTTGGAAATAGCCGCTGCGACACCACCAGCCAAAAAGTCTTTAGCAAAAGAAATGGCAGCATCAGCCATGGCAGCGTTAAATACTTAAGCTCAGTGTATTAGAAAACACGATGTACTGAACGAGCAGGCAGTAGCAGGAGGTAGAGCCGCGGAAAGTGACGGTGATGCTGCAGACAGAGGACACACAGCGCGAACTCTCGAGGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU58866 True 751 lncRNA 0.45 2 3595304 3599012

Neighbor

gene id symbol gene type direction distance location
CI01000009_03466999_03473248 SHOX, MOG-12 coding upstream 121890 3466853 ~ 3473414 (+)
CI01000009_03335503_03355421 NA coding upstream 239878 3335503 ~ 3355426 (+)
CI01000009_03330968_03333405 NA coding upstream 261851 3330585 ~ 3333453 (+)
CI01000009_03313112_03329470 MED14 coding upstream 265794 3313112 ~ 3329510 (+)
CI01000009_03301176_03305406 LAMP1 coding upstream 289709 3301176 ~ 3305595 (+)
CI01000009_03650884_03661357 TFDP1A, TFDP1 coding downstream 51872 3650884 ~ 3661357 (+)
CI01000009_03680266_03685634 NA coding downstream 81254 3680266 ~ 3685655 (+)
CI01000009_03689901_03697052 GABPA coding downstream 90318 3689330 ~ 3697470 (+)
CI01000009_03724620_03726787 NA coding downstream 124398 3723410 ~ 3727389 (+)
CI01000009_03760934_03761223 NA coding downstream 161922 3760934 ~ 3761839 (+)
G51659 NA non-coding upstream 167531 3427566 ~ 3427773 (+)
G51639 NA non-coding upstream 283835 3310954 ~ 3311469 (+)
G51638 NA non-coding upstream 285767 3309078 ~ 3309537 (+)
G51637 NA non-coding upstream 286545 3308526 ~ 3308759 (+)
G51569 NA non-coding upstream 304494 3287328 ~ 3290810 (+)
G51734 NA non-coding downstream 11223 3610235 ~ 3610474 (+)
G51735 NA non-coding downstream 11468 3610480 ~ 3610852 (+)
G51736 NA non-coding downstream 12066 3611078 ~ 3611277 (+)
G51695 NA non-coding downstream 13182 3612194 ~ 3612467 (+)
G51676 NA non-coding downstream 42208 3641220 ~ 3643110 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 386320 3202207 ~ 3208984 (+)
G51529 NA other upstream 532717 3062033 ~ 3062587 (+)
G51274 NA other upstream 1244818 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1693878 1897343 ~ 1919516 (+)
G51122 NA other upstream 1913338 1680146 ~ 1681966 (+)
G53388 NA other downstream 1923230 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2261290 5931718 ~ 5943899 (+)
G53651 NA other downstream 2646552 6245564 ~ 6248392 (+)
G56100 NA other downstream 5530288 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 6254347 9853929 ~ 9856587 (+)

Expression


Co-expression Network