G100278


Basic Information

Item Value
gene id G100278
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 2886353 ~ 2889415 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU135352
aaaaaaaaaaaaaaaaaacacaaaaaaacagtggtttatttaacatgtaaaaatTGTTCTTTTCATTTGGGTTCAGAAGGATCCAATCAgtccaaaaacaacaaaaaatgcttCCTacgataagtaaataaactagtataaaattaaatgcaaatctttacctggcccatgttaatgtctggactggctgtagaaacctttgactgggattcctgtcGTCATGTGAC

Function

NR:

description
docosahexaenoic acid omega-hydroxylase CYP4F3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135352 True 227 lncRNA 0.32 2 2886353 2889415

Neighbor

gene id symbol gene type direction distance location
exosc1 exosc1,LOC107700859,LOC107598491 coding upstream 367427 2508536 ~ 2518926 (+)
LOC103022670 pgam1,LOC108436383,LOC108258456,LOC107729838,LOC107700858,LOC107598490 coding upstream 379973 2504485 ~ 2506380 (+)
LOC103025604 LOC108436360,LOC107598482,LOC107700849,LOC107747162 coding upstream 470532 2401554 ~ 2415821 (+)
khsrp khsrp coding upstream 496374 2369956 ~ 2389979 (+)
vps54 vps54,LOC107709616 coding upstream 558091 2308299 ~ 2328262 (+)
nthl1 nthl1 coding downstream 108144 2997559 ~ 3004262 (+)
slc9a3r2 slc9a3r2 coding downstream 119446 3008861 ~ 3031715 (+)
LOC111193603 NA coding downstream 253635 3143050 ~ 3149166 (+)
LOC111193604 NA coding downstream 265803 3155218 ~ 3159534 (+)
LOC111193506 NA coding downstream 275231 3164646 ~ 3170094 (+)
G100277 NA non-coding upstream 21485 2862630 ~ 2864868 (+)
G100268 NA non-coding upstream 100514 2785052 ~ 2785839 (+)
G100267 NA non-coding upstream 102694 2782991 ~ 2783659 (+)
G100251 NA non-coding upstream 167615 2664493 ~ 2718738 (+)
G100265 NA non-coding downstream 27188 2916603 ~ 2917428 (+)
G100282 NA non-coding downstream 29321 2918736 ~ 2973504 (+)
G100281 NA non-coding downstream 30064 2919479 ~ 2923467 (+)
G100283 tsc2 non-coding downstream 37244 2926659 ~ 2940177 (+)
G100288 tsc2 non-coding downstream 102003 2991418 ~ 2997416 (+)
tekt4 LOC108436369 other upstream 236203 2642087 ~ 2650150 (+)
LOC111193505 NA other upstream 260848 2610517 ~ 2625505 (+)
LOC111193601 NA other upstream 385922 2493761 ~ 2500431 (+)
avpi1 NA other upstream 422968 2451401 ~ 2463385 (+)
LOC103026535 slc25a23a,LOC103026535,LOC107594260,LOC107703801,LOC107747161,LOC108258471 other upstream 517789 2343619 ~ 2368564 (+)
G100300 NA other downstream 155212 3044627 ~ 3046637 (+)
LOC103046164 NA other downstream 199238 3088653 ~ 3117263 (+)
G100314 NA other downstream 269241 3158656 ~ 3209330 (+)
LOC103023443 NA other downstream 337324 3226739 ~ 3229366 (+)
LOC103022119 NA other downstream 1122580 4011995 ~ 4060749 (+)

Expression


Co-expression Network