G100282


Basic Information

Item Value
gene id G100282
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 2918736 ~ 2973504 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU135356
tgttgaaatattttattcatcacCAACAAGCAAAAACAGCATCTCGTCTTACAAAGGATTTAGTGTTTATTCGCTCCGTAAATCAataattacacacaaaaaaataaaataaaaatcactcactcacactggTTTCTGATGGATGaccaaataatataataaatatctgCATTATAGATCATTAATGCTGAGTTTCAGAGAGCAGAGCTCAGATTTAGCTCCCTGTGAAAAAGCTGATCCTAAAATAAGCCTAATTTACCTCAGTTACGCTCAGAATCGCAATCCTGGATCAGATCTAAATCAGATCTAATCTGCTCTCGCTGTGTTAAAACAGTGAgcgcatttacacacacacgtcataatcagattactgcagaatattaaaaaacatcGTTTTTTTAGCAATCCGATTAACATGTTTACATCAGCTTGTGTAATCagattgcaaaaaaaaacttttacatgAGTTTACACTCATCAGgcaataatcagat
>TU135357
tgttgaaatattttattcatcacCAACAAGCAAAAACAGCATCTCGTCTTACAAAGGATTTAGTGTTTATTCGCTCCGTAAATCAataattacacacaaaaaaataaaataaaaatcactcactcacactggTTTCTGATGGATGaccaaataatataataaatatctgCATTATAGATCATTAATGCTGAGTTTCAGAGAGCAGAGCTCAGATTTAGCTCCCTGTGAAAAAGCTGATCCTAAAATAAGCCTAATTTACCTCAGTTACGCTCAGAATCGCAATCCTGGATCAGATCTAAATCAGATCTAATCTGCTCTCGCTGTGTTAAAACaaacaaacaaaaaaaacaaacaaag

Function

NR:

description
phylloquinone omega-hydroxylase CYP4F2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135356 True 494 lncRNA 0.33 2 2918736 2919257
TU135357 False 357 lncRNA 0.33 3 2918736 2973504

Neighbor

gene id symbol gene type direction distance location
pkd1 pkd1 coding upstream 2536 2775158 ~ 2916200 (+)
exosc1 exosc1,LOC107700859,LOC107598491 coding upstream 399810 2508536 ~ 2518926 (+)
LOC103022670 pgam1,LOC108436383,LOC108258456,LOC107729838,LOC107700858,LOC107598490 coding upstream 412356 2504485 ~ 2506380 (+)
LOC103025604 LOC108436360,LOC107598482,LOC107700849,LOC107747162 coding upstream 502915 2401554 ~ 2415821 (+)
khsrp khsrp coding upstream 528757 2369956 ~ 2389979 (+)
nthl1 nthl1 coding downstream 24055 2997559 ~ 3004262 (+)
slc9a3r2 slc9a3r2 coding downstream 35357 3008861 ~ 3031715 (+)
LOC111193603 NA coding downstream 169546 3143050 ~ 3149166 (+)
LOC111193604 NA coding downstream 181714 3155218 ~ 3159534 (+)
LOC111193506 NA coding downstream 191142 3164646 ~ 3170094 (+)
G100265 NA non-coding upstream 1308 2916603 ~ 2917428 (+)
G100278 NA non-coding upstream 29321 2886353 ~ 2889415 (+)
G100277 NA non-coding upstream 53868 2862630 ~ 2864868 (+)
G100268 NA non-coding upstream 132897 2785052 ~ 2785839 (+)
G100267 NA non-coding upstream 135077 2782991 ~ 2783659 (+)
G100288 tsc2 non-coding downstream 17914 2991418 ~ 2997416 (+)
G100305 NA non-coding downstream 90449 3063953 ~ 3125580 (+)
G100317 NA non-coding downstream 208687 3182191 ~ 3200431 (+)
G100377 nup133,LOC106564728 non-coding downstream 382074 3355578 ~ 3357876 (+)
G100387 NA non-coding downstream 417513 3391017 ~ 3394325 (+)
tekt4 LOC108436369 other upstream 268586 2642087 ~ 2650150 (+)
LOC111193505 NA other upstream 293231 2610517 ~ 2625505 (+)
LOC111193601 NA other upstream 418305 2493761 ~ 2500431 (+)
avpi1 NA other upstream 455351 2451401 ~ 2463385 (+)
LOC103026535 slc25a23a,LOC103026535,LOC107594260,LOC107703801,LOC107747161,LOC108258471 other upstream 550172 2343619 ~ 2368564 (+)
G100300 NA other downstream 71123 3044627 ~ 3046637 (+)
LOC103046164 NA other downstream 115149 3088653 ~ 3117263 (+)
G100314 NA other downstream 185152 3158656 ~ 3209330 (+)
LOC103023443 NA other downstream 253235 3226739 ~ 3229366 (+)
LOC103022119 NA other downstream 1038491 4011995 ~ 4060749 (+)

Expression


Co-expression Network